Jatropha Genome Database

JcCA0080281.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080281.20 + phase: 0 
         (322 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008764 conserved hypothetical protein                          521   e-148

>30174.m008764 conserved hypothetical protein
          Length = 320

 Score =  521 bits (1342), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/322 (78%), Positives = 283/322 (87%), Gaps = 2/322 (0%)

Query: 1   MDCWKGILKVPVDPTSRSYCRVAVSLCLSPSSKSLTVPSANAIFFSGDRVEGTENPVIER 60
           M+ W+G+LKVPVD +SR+YCRVAVSLCLSP+++S  VP ANAIFF GDRVEGT NPVIER
Sbjct: 1   MEYWRGVLKVPVDSSSRNYCRVAVSLCLSPNTRSPIVPCANAIFFCGDRVEGTNNPVIER 60

Query: 61  LSDLQKIAEILVSKFGGSVNAWVIEASSFNGPFAVYKDFIPSVNCWGEPKSYSPAGFPAS 120
           LSD Q IA++LVSKFG  VNAWVIEAS FNGPFAVY+DFIPSVN WGEPKSY P  FPAS
Sbjct: 61  LSDPQNIAQVLVSKFGAPVNAWVIEASIFNGPFAVYRDFIPSVNQWGEPKSYIPDEFPAS 120

Query: 121 TSTISLLSNCIREAKKVISTKEKDPISASASSASFYEPKTYILGFSKGGIVLNQLVAELS 180
           TST+SLLSNC++EAKK IST +      S +S+S  EPKTYILGFSKGG VLNQLVAELS
Sbjct: 121 TSTLSLLSNCLKEAKKAISTTKS--TGRSLASSSCCEPKTYILGFSKGGTVLNQLVAELS 178

Query: 181 VSEVKLNSKEQHMNRKCSQEDIQIIPRSKESLLNSITEIHYVDVGLNSAGAYITDHNVIE 240
           VS+V+ N+KEQ M R CS ED+QIIP SKESLLNSITEIHYVDVGLNSAGAYITDHNVIE
Sbjct: 179 VSQVQSNTKEQQMIRGCSDEDVQIIPLSKESLLNSITEIHYVDVGLNSAGAYITDHNVIE 238

Query: 241 RISKRLTQGAPGIRFVLHGTPRQWCDSRRVLIRNEKDKLVHLLQSEARRSGGKLKVCEKF 300
            ISKR+ QGAPGIRF+LHGTPRQW DSRRVLIR EKDKL++LLQSEAR+SGGKLKVCEKF
Sbjct: 239 SISKRVMQGAPGIRFILHGTPRQWGDSRRVLIRKEKDKLINLLQSEARKSGGKLKVCEKF 298

Query: 301 YFADRPPDLQMHFEIIQSMDVS 322
           YFADR P+LQMHFEII++MDVS
Sbjct: 299 YFADRAPNLQMHFEIIENMDVS 320