Jatropha Genome Database

JcCA0079871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079871.20 - phase: 2 /pseudo/partial
         (372 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28470.m000438 ap endonuclease, putative                               469   e-132

>28470.m000438 ap endonuclease, putative
          Length = 486

 Score =  469 bits (1206), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/415 (59%), Positives = 282/415 (67%), Gaps = 48/415 (11%)

Query: 2   IGAPAKGRKSDLVSALKFFVSKHLDGXXXXXXXXXXXXTCTEKLSLQKGATNVSDEKLNT 61
           +G PAKGRKS+LVS+LK FV KHLDG            T TE + LQ    NV DE ++ 
Sbjct: 76  VGIPAKGRKSELVSSLKSFVDKHLDGESSKEAEDRICSTPTEYILLQNNVNNVCDENISI 135

Query: 62  VSEDLCFKQSKRRVKQSVAVGTNESVKVDSEMSTIKEKDSVKREEVS------------- 108
            SE  C KQS R+VKQS +   +E+V  D+++ T KEK S+K+ + S             
Sbjct: 136 ASEVSCLKQSNRKVKQSPS--KDETVN-DAQIVTTKEKLSIKKNKFSVRTSSQTRIKLSS 192

Query: 109 ---------AEPWTILAHKKPQKGWIPYNPGTMRPPPPAGDTKFVKLMSWNVNGLRALLK 159
                    AEPWTILAHKKPQK WI YNP TMRPPP A DTKFVKLMSWNVNGLRALLK
Sbjct: 193 PDNLVIEPHAEPWTILAHKKPQKSWIAYNPRTMRPPPLAEDTKFVKLMSWNVNGLRALLK 252

Query: 160 SEGFSALELAQRENFDEKDVESIKHCLIDGYDSSFWTCSRSKLGYSGTAIISRIKPISVS 219
            EGFSA+ELAQRENFD    +  K     GY++SFWTCS SKLGYSGTAI+SR+KP+SVS
Sbjct: 253 LEGFSAVELAQRENFDVLCFQETK-LQAKGYENSFWTCSHSKLGYSGTAIVSRVKPLSVS 311

Query: 220 YGLGIPDHDSEGRLVTAEFDSFYLISAYVPNSGDGLKRLSYRIGEWDLSLSNYLKELEKS 279
           YGLGI DHDSEGRLVTAEFDSFYL++AYVPNSGDGLKRLSYR+ +WDLSLSNY+KELEKS
Sbjct: 312 YGLGIADHDSEGRLVTAEFDSFYLLNAYVPNSGDGLKRLSYRVSQWDLSLSNYMKELEKS 371

Query: 280 KPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGTKLFVKGICGYFQKTTSKMLX 339
           KPVIL GDLNCAHQEIDIYNPAGNRR+AGFTDEERQSF T    +G    F+K    ++ 
Sbjct: 372 KPVILNGDLNCAHQEIDIYNPAGNRRNAGFTDEERQSFETNFLSRGFVDSFRKQHPDVVG 431

Query: 340 AILTG----------------------VIDMAGAKPIKPDVNGSDHCPIGLILKL 372
               G                      + D      I PDV GSDHCPIGL+LK+
Sbjct: 432 YTYWGYRHGGRKTNKGWRLDYFLVSESISDQVHDSYIVPDVTGSDHCPIGLVLKV 486