Jatropha Genome Database

JcCA0078491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0078491.10 - phase: 0 /partial
         (104 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27985.m000861 conserved hypothetical protein                          129   3e-31

>27985.m000861 conserved hypothetical protein
          Length = 270

 Score =  129 bits (324), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/105 (66%), Positives = 75/105 (71%), Gaps = 1/105 (0%)

Query: 1   MAATVQSVASTAG-GARSLPFQRTLAITSTKFLSRWVSSKMDFNFLQLGCRKNTTLPARK 59
           MAA   S AS A  GA  LP QRTL  T   FLS W SSK   N LQL CRK   LP RK
Sbjct: 1   MAAAALSTASVARRGAYLLPLQRTLEKTRITFLSTWASSKTGLNPLQLWCRKIKALPTRK 60

Query: 60  LLIRAARTESQGVFLGFRPPNFELPEPLTGKTWKLDDFESYPALL 104
           L++RAARTESQGV LGFR P+FEL EPLTGK W+L+DFESYPALL
Sbjct: 61  LIVRAARTESQGVNLGFRAPHFELQEPLTGKIWELEDFESYPALL 105