Jatropha Genome Database

JcCA0077581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077581.10 + phase: 0 
         (175 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30204.m001765 conserved hypothetical protein                           93   8e-20
29904.m002958 conserved hypothetical protein                           71   2e-13

>30204.m001765 conserved hypothetical protein
          Length = 239

 Score = 92.8 bits (229), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 92/170 (54%), Gaps = 41/170 (24%)

Query: 1   MGKYMKKSKITADVAVMELSLSHSQSTTLGVRTRAKTLALQRLHXXXXXXXXXXXXXXXX 60
           MGKYMKKSKIT+DV V+       +STTLGVRTRAKTLAL                    
Sbjct: 1   MGKYMKKSKITSDVTVV------MESTTLGVRTRAKTLAL--------------AAADSS 40

Query: 61  XYLQLRSRRLEKHPPPLLNGTKKPEI----------PQQLASNKKL-PKGSSRLSKVKAV 109
            Y+QLR+R +EK P  L     K              Q    NKKL  + +SRL++  +V
Sbjct: 41  SYIQLRNRHIEKPPLLLNENNNKLLQQQQQKKQLRETQDSCFNKKLNSRATSRLTR-SSV 99

Query: 110 AG--DFEKVEEGEGCFDKK-------CEAEDLGIEASFGENYLEFESRER 150
            G  D E+ EE EGCF KK       CEA+D G+E SFGENYL+ +SR+R
Sbjct: 100 KGSRDCEEEEEVEGCFGKKGEMLALKCEADDFGVEVSFGENYLDSDSRDR 149


>29904.m002958 conserved hypothetical protein
          Length = 266

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 94/203 (46%), Gaps = 51/203 (25%)

Query: 1   MGKYMKKSKITADVAVMELSLSHSQSTTLGVRTRAKTLALQRLHXXXXXXXXXXXXXXXX 60
           MGKY++K+K T++VAVM+LS         GVRTRAKTLALQR                  
Sbjct: 1   MGKYIRKAKTTSEVAVMDLSF--------GVRTRAKTLALQRQRQRQRQRQPPPPPPPHP 52

Query: 61  X--------YLQLRSRRLEKHPPPLLNGTKKPEIPQQLASNK------------------ 94
                    YLQLRSRRL K PP L++ +K+ +      SNK                  
Sbjct: 53  PSPPSSAGGYLQLRSRRLVKKPPILVHVSKRQKDGHSSNSNKVGLNPNNSNNNNSNSISS 112

Query: 95  -------KLPKGSSRLSKVKAVAGDFEK--VEEGEGCFD---KKCEAEDLGI-EASFGEN 141
                  ++  GS    +  A +G+ E+  VE+ + C D      E++DLG+ EASFGEN
Sbjct: 113 SKSGSRVRVSPGSGPKEEF-AGSGNREEEIVEKNKSCADDNNNNNESKDLGVEEASFGEN 171

Query: 142 YLEFESRE---RYGLCLFFVFDP 161
            L+ E RE   R       + DP
Sbjct: 172 VLDIEGRESSTRESTPCSLIRDP 194