Jatropha Genome Database

JcCA0077471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077471.20 + phase: 0 
         (113 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007028 conserved hypothetical protein                          164   6e-42
29908.m005974 conserved hypothetical protein                          120   2e-28
29630.m000786 conserved hypothetical protein                          109   3e-25

>30131.m007028 conserved hypothetical protein
          Length = 118

 Score =  164 bits (416), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 91/108 (84%)

Query: 1   MPEEDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINS 60
           MPEE++V+LKFRLYDG+DIGPFRYS ASTV MLK+RIV++WPK K + PKA N++KLIN+
Sbjct: 1   MPEEEVVELKFRLYDGTDIGPFRYSPASTVGMLKERIVTEWPKDKRIAPKAANDIKLINA 60

Query: 61  GKILDNNKTLGQCRTPFGEAAGGVIIMHVVVQPSLAKSKTGNWCAPVP 108
           GKIL+NNKT+GQCR PFGE   GVI MHVVVQP+LAK+KT      VP
Sbjct: 61  GKILENNKTVGQCRVPFGELPKGVITMHVVVQPTLAKAKTEKKVDEVP 108


>29908.m005974 conserved hypothetical protein
          Length = 118

 Score =  120 bits (300), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 73/95 (76%)

Query: 1  MPEEDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINS 60
          M  EDL++LKFRL DG+DIGP +Y+ A+TV  LK++I++ WPK K   PK VN++KLIN 
Sbjct: 1  MAGEDLIELKFRLADGTDIGPNKYTPATTVVTLKEKIIAQWPKDKENGPKTVNDLKLING 60

Query: 61 GKILDNNKTLGQCRTPFGEAAGGVIIMHVVVQPSL 95
          GKIL+NN+TL + R P GE  GGVI MHVV++P +
Sbjct: 61 GKILENNRTLAESRLPVGELPGGVITMHVVLRPPM 95


>29630.m000786 conserved hypothetical protein
          Length = 113

 Score =  109 bits (272), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 70/91 (76%)

Query: 4  EDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINSGKI 63
          ++ +++KFRL DGSDIGP  + +A++V  LK+ I++ WPK K   P+ V +VKLI++GKI
Sbjct: 5  QNQLEIKFRLTDGSDIGPKTFPAATSVATLKESILAQWPKEKENGPRTVKDVKLISAGKI 64

Query: 64 LDNNKTLGQCRTPFGEAAGGVIIMHVVVQPS 94
          L+NNKT+G+CR+P  +  GGV  MHVVVQPS
Sbjct: 65 LENNKTVGECRSPLCDIPGGVTTMHVVVQPS 95