Jatropha Genome Database

JcCA0077471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077471.10 - phase: 0 
         (88 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014448 ribosomal pseudouridine synthase, putative              154   1e-38

>30147.m014448 ribosomal pseudouridine synthase, putative
          Length = 385

 Score =  154 bits (388), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/76 (92%), Positives = 73/76 (96%)

Query: 1  MKRKREEENRNDMEIVWQTPANPPEKQDYIIRDGRRHVRPYHFEFISHVKNRWAGKTIVD 60
          MKRKREEEN+NDMEIVWQTPANPPEK DYI RDGRRHVRPY+FEFISH KNRWAGKTIVD
Sbjct: 1  MKRKREEENKNDMEIVWQTPANPPEKHDYIFRDGRRHVRPYYFEFISHAKNRWAGKTIVD 60

Query: 61 LFAEEFKGRPYEYYVS 76
          LFAEEFKGRPY+YYVS
Sbjct: 61 LFAEEFKGRPYDYYVS 76