Jatropha Genome Database

JcCA0077451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077451.20 - phase: 2 /TE/pseudo/partial
         (202 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29674.m000206 conserved hypothetical protein                          135   1e-32
29997.m000412 conserved hypothetical protein                           59   2e-09

>29674.m000206 conserved hypothetical protein
          Length = 496

 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 105/151 (69%), Gaps = 1/151 (0%)

Query: 52  PFPERLAKTRKESEEKDILETFRKVEVNIPLLDAIKQIPKYAKFLKELCTNKRKVDSVEK 111
           P+P RL + + + +    L+ F+++++N+P ++AI Q+ KYAKFLKE+ +N RK++ + +
Sbjct: 187 PYPARLRQDKVDKQYSKFLDLFKQLKINLPFVEAISQMAKYAKFLKEILSNNRKLEDLGQ 246

Query: 112 VEMGEVCSAMIQRKRLPPKCKDRGMFAIPCKIGNVGIKRSMCDLGASINVMPLSVYSSFK 171
           V + E CSA++Q K LP K +D   F IPC IG++ I  ++ DLGASIN+MP S+++   
Sbjct: 247 VVLNEECSAILQNK-LPLKRRDLESFTIPCMIGDLSISGALADLGASINLMPTSLFAKLG 305

Query: 172 GCPLKETRIIIQLADRSIVYPVGLLEDVLVQ 202
               K TR+ +QLADR++  P G++EDVL++
Sbjct: 306 LHEPKPTRMSVQLADRTVKIPRGIIEDVLIK 336


>29997.m000412 conserved hypothetical protein
          Length = 66

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 41/58 (70%)

Query: 52  PFPERLAKTRKESEEKDILETFRKVEVNIPLLDAIKQIPKYAKFLKELCTNKRKVDSV 109
           P+P R  +   + +    L+ FR++ +N+P +DA++Q+PKYAKFLK++ + KRK++ V
Sbjct: 7   PYPARAKQAEAKEQFSKFLDIFRQLHINLPFIDALEQMPKYAKFLKDILSRKRKLEEV 64