Jatropha Genome Database

JcCA0077451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077451.10 - phase: 0 /pseudo
         (556 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002006 DNA binding protein, putative                           435   e-122
30190.m010884 Transcription regulatory protein SWI3, putative         130   2e-30
30147.m014458 DNA binding protein, putative                            95   1e-19
30170.m013959 transcriptional adaptor, putative                        65   7e-11
30093.m000352 DNA binding protein, putative                            65   1e-10
29826.m000753 transcriptional adaptor, putative                        62   6e-10

>29648.m002006 DNA binding protein, putative
          Length = 771

 Score =  435 bits (1118), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/257 (80%), Positives = 222/257 (86%), Gaps = 9/257 (3%)

Query: 188 SGKSPDHTPEKYMECRNYLVAKYMDNPEKRITVSDFQGVVFGIDNEDLTRIVRFLDHWGI 247
           SGKSPDHTPEKYMECRNY+VAKYM NPE+RI VSD QG V GI+NEDLTRIVRFLD WGI
Sbjct: 219 SGKSPDHTPEKYMECRNYIVAKYMGNPERRIAVSDCQGFVVGIENEDLTRIVRFLDQWGI 278

Query: 248 INYCAAPPNRESWNGGSYLREDPNGEVHVPSAALKSIDSLIKFDKPTCRLKVADLYSSLP 307
           INYCAAP +RESW+GGSYLREDPNGEVHVPSAALKSIDSLIKFDKP C LK A++YSSL 
Sbjct: 279 INYCAAPSSRESWSGGSYLREDPNGEVHVPSAALKSIDSLIKFDKPRCSLKAAEIYSSLS 338

Query: 308 CHDADFSDLDNKIRERLSENHCTYCSQPLPGIYYQSQKEIDVLLCSDCFHEGRFVTGHST 367
            HD DFSDLD++IRERLSENHCTYCSQ LP +YYQSQKEID+LLCSDCFHEGRFVT HS+
Sbjct: 339 YHD-DFSDLDSRIRERLSENHCTYCSQSLPSVYYQSQKEIDILLCSDCFHEGRFVTSHSS 397

Query: 368 LDFIKMDPTKDYGDLDGESWSDQETLLLLEAMEIYNENWNEIAEHVGTKS--------KS 419
           LDFIKMDPTKDYGDLDGESWSDQETLLLLEAMEIYN+NWNEIAEHVG+KS          
Sbjct: 398 LDFIKMDPTKDYGDLDGESWSDQETLLLLEAMEIYNDNWNEIAEHVGSKSIIEIDIKLSH 457

Query: 420 QCILHFLRLPMEDGLLE 436
           QC       P +D +LE
Sbjct: 458 QCFQKHTSKPCKDIILE 474


>30190.m010884 Transcription regulatory protein SWI3, putative
          Length = 983

 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/252 (37%), Positives = 134/252 (53%), Gaps = 19/252 (7%)

Query: 188 SGKSPDHTPEKYMECRNYLVAKYMDNPEKRITVSDFQGVVFGIDNEDLTRIVRFLDHWGI 247
           +GKS   TP+ YME RN++V ++  NP  +I + D   +    D +    ++ FLD+WG+
Sbjct: 167 NGKSKIRTPDIYMEIRNWIVKRFHLNPNVQIELKDLSELDVA-DVDAKQEVLEFLDYWGL 225

Query: 248 INYCAAPPNRESWNGGSYLREDPNGEVHVPSAALKSIDSLIKFDK-PTCRLKVADLYSSL 306
           IN+   P      N     R          S     ++ L  F+    C   ++    S 
Sbjct: 226 INFHPFPQTDSPANADGGGR----------SEKELLLEKLFHFETIQPCLPVISRPNVSS 275

Query: 307 PCHDADF----SDLDNKIRER--LSENHCTYCSQPLPGIYYQSQKEIDVLLCSDCFHEGR 360
           P   + F    S  D  +R      E HC  CS       Y  Q + D  LC+DCF+ G+
Sbjct: 276 PALPSGFFPDSSIADELVRPEGPAVEYHCNSCSADCSRKRYHCQTQADYDLCADCFNNGK 335

Query: 361 FVTGHSTLDFIKMDPTKDYGDLDGESWSDQETLLLLEAMEIYNENWNEIAEHVGTKSKSQ 420
           F +  S+ DFI M+P +  G + G  W+DQETLLLLEA+E+Y ENWNEIAEHV TK+K+Q
Sbjct: 336 FGSDMSSSDFILMEPAEAPG-ISGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQ 394

Query: 421 CILHFLRLPMED 432
           CILHF+++P+ED
Sbjct: 395 CILHFVQMPIED 406


>30147.m014458 DNA binding protein, putative
          Length = 547

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 140/292 (47%), Gaps = 33/292 (11%)

Query: 174 NASEVEFMWFQCIQSGKSPDHTPEKYMECRNYLVAKYMDNPEKRITVSDFQGVVFGIDNE 233
           N  E E    +    G S   TP+ Y E R++++ KY ++P +R+T ++ +  + G D  
Sbjct: 32  NIHETERAALKEFFDGSSITRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLVG-DVT 90

Query: 234 DLTRIVRFLDHWGIINYCA--APPN-RESWNGGSYLRED--PNG--EVHVPSAALKSIDS 286
            L ++ RFLD+ G+IN+ A  AP N  E    G++  ED  PNG   V +P       +S
Sbjct: 91  LLNKVFRFLDNSGLINFGADSAPYNDSEREEIGNFRVEDGPPNGIRVVAMP-------NS 143

Query: 287 LIKFDKPTCRLKVADLYSSLP---CHDADFSDLDNKIRERLSENHCTYCSQPLPGIYYQS 343
           L     P    ++ +    LP    H   F      +        C  C +      Y+ 
Sbjct: 144 LKPLSVPPQNAEIVENVLRLPPLTSHSDVFGKQIGFV--------CGNCGETCNSGRYEC 195

Query: 344 QKEIDVLLCSDCFHEGRFVTGHSTLDFIKMDPTKDYGDLDGESWSDQETLLLLEAMEIYN 403
            K  + +LC++CF+ G +   +S  D+ K + + D+    G  WS+ ET+LLLE++  + 
Sbjct: 196 SKG-EYILCTNCFNNGDYGQNNSKDDY-KFNDSVDHSS--GTVWSEAETILLLESVLKHG 251

Query: 404 ENWNEIAEHVGTKSKSQCILHFLRLPMEDGLLENIEVPSMPNSSNLSSRDDH 455
           +NW+ +   V TKSK +CI   + LP  + LL +  V    ++S LS   D+
Sbjct: 252 DNWDLVVRDVQTKSKLECIAKLIELPFRNLLLSSTLV---GDTSGLSGSADY 300


>30170.m013959 transcriptional adaptor, putative
          Length = 552

 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 56/107 (52%), Gaps = 17/107 (15%)

Query: 328 HCTYCSQPLPG-IYYQSQKEIDVLLCSDCFHEGRFVTGHSTLDFIKMDPTKDYGDLDGES 386
           HC YC + + G I  +     D  LC +CF  G  VT H +        +  Y  +D  S
Sbjct: 48  HCNYCKKDISGFIRIKCAVCPDFDLCVECFSVGAEVTPHKS--------SHPYRVMDNLS 99

Query: 387 -------WSDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKSQCILHF 425
                  W+  E +LLLE +E+Y   NW E+AEHVGTKSKS+CI H+
Sbjct: 100 FPLICPDWNADEEILLLEGIEMYGFGNWAEVAEHVGTKSKSKCIDHY 146


>30093.m000352 DNA binding protein, putative
          Length = 482

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 106/255 (41%), Gaps = 55/255 (21%)

Query: 177 EVEFMWFQCIQSGKSPDHTPEKYMECRNYLVAKY-MDNPEKRITVSDFQGVVFGIDNEDL 235
           E E  +       +SP   P  Y   RN ++  +  +NP  +IT ++ +  + G D   +
Sbjct: 79  ECEVRFLPDFFDSRSPSKNPRVYKYYRNSIIKCFRQNNPSVKITFTEVRKTLVG-DVGSI 137

Query: 236 TRIVRFLDHWGIINYCAAPPNRESWNGGSYLREDPNGEVHVPSAALKSIDSLIKFDKPTC 295
            R+  FL+ WG+INY                          PSA  K +    K  K + 
Sbjct: 138 RRVFDFLEAWGLINY-------------------------FPSALSKPLKWEDKDAKSSA 172

Query: 296 RLKVADLYSSLPCHDADFSDLDNKIRERLSENHCTYCSQPLPGIYYQSQKEIDVLLCSDC 355
              V         + AD +       +RL    C+ C Q +  I      + D+ LC+ C
Sbjct: 173 SADVKG-------NSADSTPPKRDATKRL----CSGC-QSVCSIACFVCDKFDLTLCARC 220

Query: 356 FHEGRFVTGHSTLDFIKMDPTKDYGDLDGESWSDQETLLLLEAMEIYNENWNEIAEHVGT 415
           +  G      + ++ I+ +            W+++ETL LLEA+  + ++W ++A HV  
Sbjct: 221 YVRGTI----ALVEEIRSE------------WTEKETLQLLEAVTHFGDDWKKVALHVPG 264

Query: 416 KSKSQCILHFLRLPM 430
           +S+  C+ HF++LP 
Sbjct: 265 RSERDCVSHFIKLPF 279


>29826.m000753 transcriptional adaptor, putative
          Length = 541

 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 3/105 (2%)

Query: 328 HCTYCSQPLPG-IYYQSQKEIDVLLCSDCFHEGRFVTGHSTLDFIKMDPTKDYGDLDGES 386
           HC YC++ + G I  +     D  LC +CF  G  VT H +    K+     +  L   +
Sbjct: 49  HCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYKVMDNLSF-PLICPN 107

Query: 387 WSDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKSQCILHFLRLPM 430
           W+  +  LLLE +E+Y   NW E+AEHVGTKSK  CI H+  + M
Sbjct: 108 WNADDETLLLEGIEMYGLGNWTEVAEHVGTKSKEMCIEHYTNIYM 152