Jatropha Genome Database

JcCA0077401.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077401.20 - phase: 1 /pseudo/partial
         (208 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005304 Cell growth-regulating nucleolar protein, putative       47   8e-06

>29912.m005304 Cell growth-regulating nucleolar protein, putative
          Length = 312

 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 68/155 (43%), Gaps = 14/155 (9%)

Query: 1   QDNKHVEEQNVLDVPKADKVHNDAGTESGK-PSKKKRKLDESRSDGTGQKXXXXXXXXXX 59
            DNK +EEQ   + P A   H    T++ K  SK+KRK +ES  +  G+K          
Sbjct: 151 HDNKQMEEQREQNTPAA---HAKPETDTEKLQSKRKRKTNESGRNDAGEKAGADSPDE-- 205

Query: 60  XXVVQAERTKAEEMESQLKKAKQNGLKDDRVVESGSXXXXXXXXXXXXXXXXXXXXXNPD 119
               +  + KAE   S+LKKAK++GL       +G                      NPD
Sbjct: 206 ---TEDGQAKAEGQVSELKKAKRDGLN-----ATGFTKEDTNKKIKLKKLIKSALRTNPD 257

Query: 120 GXXXXXXXXXXXXXSIQECGITEDESQFSEMLEQK 154
           G             S++E GI EDE++ ++MLEQK
Sbjct: 258 GVLKMKKLKKLVFKSLRESGIIEDETRVNDMLEQK 292