Jatropha Genome Database

JcCA0077011.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077011.20 - phase: 0 /pseudo/partial
         (85 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

48739.m000077 conserved hypothetical protein                           68   1e-12
29854.m001117 conserved hypothetical protein                           52   4e-08

>48739.m000077 conserved hypothetical protein
          Length = 104

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 36/47 (76%)

Query: 1  RYLEDGPDAAELQLGSGFPTGMGTGDSYLGAHHDLHARPARPHEV*R 47
          R LEDGPDA+E Q GSGFPTG GTGD +L AHHDL A PARP +  R
Sbjct: 39 RCLEDGPDASERQPGSGFPTGRGTGDGHLEAHHDLQATPARPGKATR 85


>29854.m001117 conserved hypothetical protein
          Length = 92

 Score = 52.4 bits (124), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 28/37 (75%)

Query: 1  RYLEDGPDAAELQLGSGFPTGMGTGDSYLGAHHDLHA 37
          R LEDGP+ +E Q  SGFPTG GTGD ++ AHHDL A
Sbjct: 56 RCLEDGPNTSERQPRSGFPTGRGTGDGHVEAHHDLQA 92