Jatropha Genome Database

JcCA0076481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076481.10 + phase: 0 
         (275 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014109 conserved hypothetical protein                          408   e-114
29970.m000983 microtubule binding protein, putative                   170   5e-43

>30147.m014109 conserved hypothetical protein
          Length = 249

 Score =  408 bits (1048), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/276 (76%), Positives = 221/276 (80%), Gaps = 28/276 (10%)

Query: 1   MASNIGMMDSAYFVGRNEILTWINNRLQLNLTRIEEAASGAVQCQMMDMTYPGVVPMHKV 60
           MASNIGMMDSAYFVGRNEILTWINNRLQLNL+RIEEAASGAVQCQMMDMTYPGVVPMHKV
Sbjct: 1   MASNIGMMDSAYFVGRNEILTWINNRLQLNLSRIEEAASGAVQCQMMDMTYPGVVPMHKV 60

Query: 61  NFDAKTEYDMIQNYKVLQEVFNKLKIEKHIEVNRLVKGRPLDNLEFLQWLKRYCDSINGG 120
           NFDAKTEYDMIQNYKVLQ+VFNKLKI+K                    +  R+       
Sbjct: 61  NFDAKTEYDMIQNYKVLQDVFNKLKIDK--------------------FSARF-----NK 95

Query: 121 IMNENYNPVERRIKGGKDRNSKGCPKTSKSLQSNIMHNSASGEPVGLSKTSGPKPXXXXX 180
           + N NYNPVERRIKGGKDRNSKGC KTSKSLQSN MHN  SGEPVGLSK SGPK      
Sbjct: 96  LGNRNYNPVERRIKGGKDRNSKGCQKTSKSLQSNNMHN--SGEPVGLSKMSGPKQGRGST 153

Query: 181 XXXXXXXXXEIETLSKEITDLKLSVDHLEKERDFYFAKLRDIEILCQTPELEDIPMAVAI 240
                    EI+TLSKE+TDLKLSVDHLEKERDFYFAKLRDIE+LCQTPELEDIPMAVAI
Sbjct: 154 VAGGANSSVEIQTLSKEVTDLKLSVDHLEKERDFYFAKLRDIELLCQTPELEDIPMAVAI 213

Query: 241 KKILYAADAKESALEEAQEYLNQALN-GEVEDENEA 275
           KKILYAADAKESALEEAQEYL QA+N GE E ENEA
Sbjct: 214 KKILYAADAKESALEEAQEYLYQAMNSGETEAENEA 249


>29970.m000983 microtubule binding protein, putative
          Length = 264

 Score =  170 bits (431), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 137/270 (50%), Gaps = 76/270 (28%)

Query: 1   MASNIGMMDSAYFVGRNEILTWINNRLQLNLTRIEEAASGAVQCQMMDMTYPGVVPMHKV 60
           MA+NIGMMD+AYFVGR+EIL WIN+ LQLNL+++EEA SGAV CQ+MD  +PG+VPMHKV
Sbjct: 1   MATNIGMMDAAYFVGRSEILAWINSTLQLNLSKVEEACSGAVHCQLMDAVHPGMVPMHKV 60

Query: 61  NFDAKTEYDMIQNYKVLQEVFNKLKIEKHIEVNRLVKGRPLDNLEFLQWLKRYCDSINGG 120
           NFDAK+EY+MIQNYKVLQ+VFNKLKI K              N   L      C  +   
Sbjct: 61  NFDAKSEYEMIQNYKVLQDVFNKLKITK-------------SNYNLL-----LCFVV--- 99

Query: 121 IMNENYNPVERR--IKGGKDRNSKGCPKTSKSLQSNIMHNSASGEPVGLSKTSGPKPXXX 178
               +YNP+ERR   KGGK+  +K CP +          +SA G       T+ PK    
Sbjct: 100 ----SYNPLERREACKGGKE-TTKKCPPS---------QSSAKGS------TAAPKAQS- 138

Query: 179 XXXXXXXXXXXEIETLSKEITDLKLSVDHLEKERDFYFAKLRDIEILCQTPELEDIP--- 235
                                       H  +  D       +       P    +P   
Sbjct: 139 ---------------------------SHNARRNDATSVNSANQSAKASKPPPSAVPAYD 171

Query: 236 --MAVAIKKILYAADAKESALEEAQEYLNQ 263
             +  AIK+ILYAAD   S + EAQ  L+Q
Sbjct: 172 AQVVAAIKRILYAADDNASVVAEAQAMLHQ 201