Jatropha Genome Database

JcCA0076141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076141.10 + phase: 2 /pseudo/partial
         (378 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30040.m000265 nuclear matrix protein, putative                        333   1e-91

>30040.m000265 nuclear matrix protein, putative
          Length = 608

 Score =  333 bits (853), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 157/193 (81%), Positives = 166/193 (86%)

Query: 186 FTEFFCNPVSLTLAPTKWHKFTATLMVVLNTFDAQPLSXXXXXXXXXXXXXXTFNIKYLT 245
             E FCNP  LTLAPTKWHKFT++LMVVLNTF+AQPLS              TFNIKYLT
Sbjct: 219 LQENFCNPAPLTLAPTKWHKFTSSLMVVLNTFEAQPLSEEEGDANNLEEEAATFNIKYLT 278

Query: 246 SSKLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKDLTSESMKEEIKTCEERVKKLLE 305
           SSKLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKD TSESMKE+I+TCEERVKKLLE
Sbjct: 279 SSKLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKDSTSESMKEDIRTCEERVKKLLE 338

Query: 306 MTPPKGKDFLHMVEHILEREKNWVWWKRDGCPAFEKQPIENKMVQDGVKKRKPRWRLGNK 365
           MTPPKGKDFL  +EH+LEREKNWV WKRDGC  FEKQPIENK +Q+G KKRKPRWRLGNK
Sbjct: 339 MTPPKGKDFLQKIEHVLEREKNWVCWKRDGCQPFEKQPIENKTIQEGSKKRKPRWRLGNK 398

Query: 366 ELSQLWKWADQNP 378
           ELSQLWKWADQNP
Sbjct: 399 ELSQLWKWADQNP 411