Jatropha Genome Database

JcCA0076121.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076121.30 - phase: 2 /pseudo/partial
         (287 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29822.m003458 hypothetical protein                                    239   1e-63

>29822.m003458 hypothetical protein
          Length = 366

 Score =  239 bits (610), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/294 (48%), Positives = 178/294 (60%), Gaps = 35/294 (11%)

Query: 23  LFVIFPAGLLRTKNAHGTKNYSW----KRKRRMLSEEVE---KLQGQLFLSSKDDKND-- 73
           +F++  A L  TK+    +         +K ++L EEVE   KLQ Q   SSK   +D  
Sbjct: 77  VFLLVVAPLCSTKDEECARYQKQLMEESQKNKVLYEEVERLQKLQEQFSFSSKHGTDDNK 136

Query: 74  --------QVTSGEMIGDSLRRTTRKRSQEARTDLEGIVTPNQSDHHDLLVXXXXXXXXX 125
                    VTSGE+I +S RR T KRS+EA  + EG +TP++S+  DLLV         
Sbjct: 137 QLKMLQIAHVTSGEVISESTRRMTIKRSREASAEKEGFITPDRSNQDDLLVRESAKDPSA 196

Query: 126 -------XXXEMDAVSTPGQSYQDDLLVRELAEGSSRGTMSGANLENVKQVILQPEFCRR 178
                     E D   +P QS +DD+ +R  A   SR T+S  +L N ++    P  C R
Sbjct: 197 VRRRSGEAGVESDDFISPDQSNRDDVSLRVSANDPSRLTVSSGDLGNEQE----PACCGR 252

Query: 179 TVQISA------NNSSTNCQFQALIEYLLGMKFSTVIQSDDRICISALHQSSGYSFILTW 232
           TV  S       +N STNCQFQALIE LLGMK ST  Q+++ IC+SALHQSSGYSF LTW
Sbjct: 253 TVGRSGGGGFVTDNGSTNCQFQALIECLLGMKLSTANQTEE-ICVSALHQSSGYSFSLTW 311

Query: 233 VDKDSAKEPELLYRASTLGTFERVAPEWMRSVLMFSTSMCPIFFERIARVIKMH 286
           V K + +EPELLYR STLGTFERVAPEWMRSV+ FSTSMCPIFFER+A VIKMH
Sbjct: 312 VKKAAGQEPELLYRPSTLGTFERVAPEWMRSVIKFSTSMCPIFFERVASVIKMH 365