Jatropha Genome Database

JcCA0075511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075511.20 + phase: 1 /TE
         (566 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30024.m001697 conserved hypothetical protein                           57   2e-08

>30024.m001697 conserved hypothetical protein
          Length = 190

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%)

Query: 10  IDEAYTWWITVQQRVSAEQRTWQFFLDEFKKKFITEAYLDARRKEFLYLRQNRMSVAEYE 69
           I+   + W  +  ++  E  TW  F   F   F++++    R  +F  LRQ  MS+ E+ 
Sbjct: 52  INGGSSQWFAMHIKLEMETMTWVEFKGRFTTWFLSKSEKRKRMHDFERLRQGNMSIKEHT 111

Query: 70  REFTRLSRYGERIVATEAERCKKFQEGLND 99
           RE  RL RY   + A E E+C K+ +GL++
Sbjct: 112 RESVRLIRYAPVVAADEFEKCSKYVKGLDE 141