Jatropha Genome Database

JcCA0075421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075421.20 - phase: 0 /pseudo
         (638 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014178 hypothetical protein                                    469   e-132
30170.m014179 conserved hypothetical protein                          110   2e-24

>30170.m014178 hypothetical protein
          Length = 441

 Score =  469 bits (1207), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/452 (56%), Positives = 306/452 (67%), Gaps = 18/452 (3%)

Query: 194 LLVKHEEQKPPCNSVNFCVPPGPHQDTNGLDQAVKLEISLLDRKPEIALGQSMTIGSQLD 253
           + VKHEEQK P N+V +C P G HQD   L Q VKLEIS LDRK + AL  + TIG+QLD
Sbjct: 1   MFVKHEEQKSPSNAVKYCFPSGSHQDMGKLKQTVKLEISQLDRKSDTALELTTTIGTQLD 60

Query: 254 QHHTISESKNNGPALWPGLSSTVSTTASHGPLSQSCAVKVPAWLGSRP--GFLQNXXXXX 311
           Q H I+ESK+N  + WPGLSSTVS+T     LSQS A K+PAWL +    G + +     
Sbjct: 61  QQHLINESKSN--SSWPGLSSTVSSTFCRDSLSQSFAAKIPAWLNTTTSHGPVLSDSSTG 118

Query: 312 XXXXXXTDRRSWKRCAAHGYISHLIRALQTSDGKESLPVPQNQLRPHEILKQGVLMTIND 371
                 TDRRSWKRCAAH YIS LIR L+  + KESL +P NQLRPHEILKQGVLMTIND
Sbjct: 119 KLSKVPTDRRSWKRCAAHVYISRLIRVLEVPESKESLQLPSNQLRPHEILKQGVLMTIND 178

Query: 372 FNRSRTDLSGITSAASTIVNPVEKNSNDNKIGILQHLRPHQDNSPAALASGMYTSHKQSF 431
           FN +  DL+G+ S AS+++N ++KN +D K G LQHLR  QD+S  AL+ G+YTS KQ  
Sbjct: 179 FNSN--DLNGVAS-ASSLINKIKKNPSDAKSGNLQHLRLRQDHSQPALSCGVYTSQKQGC 235

Query: 432 NFLSLTAGGGGMEPNSSFNGVGNTLEPLAQLQVPYHAQHPTLVPFSMSQTRYTSAYTDXX 491
           NFLSL+AGGGG+E  +S +G G+  EP AQLQVPY+AQHPT++PFSMSQ +Y  AY D  
Sbjct: 236 NFLSLSAGGGGIE--TSLSGAGHGSEPSAQLQVPYNAQHPTIMPFSMSQAQYAPAYPDQF 293

Query: 492 XXXXXXXXXXXX--HVSSPYCVPHVSPKAMTKXXXXXXX--XXXXXXXYRNNGTSTATTQ 547
                         H SSPYC PH +PKA+TK                +RNNGTS+  TQ
Sbjct: 294 SAAAAQQAQLQLPPHFSSPYCGPHANPKALTKQQQQQQRFWAAQLAAQFRNNGTSSTVTQ 353

Query: 548 FPGWQSGRQDSPVLLPCI-PSPSTLEVVGPKYPRISXXXXXXXXXXFMAFPLSDARAKRQ 606
           FP WQ+GRQDS  L+P    SPSTLEV+G KYP++S          FMA  L  AR KRQ
Sbjct: 354 FPSWQNGRQDSNTLMPFFSSSPSTLEVLGHKYPQVS----QQQQQQFMAITLPHARMKRQ 409

Query: 607 DHHISSVYEENGVGFRAGGGPLPLQLLCNERL 638
           DHH+SSVYE++GVGFRAGGG LPLQLLCNERL
Sbjct: 410 DHHLSSVYEDSGVGFRAGGGALPLQLLCNERL 441


>30170.m014179 conserved hypothetical protein
          Length = 86

 Score =  110 bits (276), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/99 (62%), Positives = 68/99 (68%), Gaps = 20/99 (20%)

Query: 5   MIETDKSRDVRRGASRFSRQIKQSGLKLVSALNGDFLSLEKTTKERIKKLSAVNRETSSK 64
           MIE DKSRDVRRGASRF R IKQS               EK++KERIKKLSAVNR T S 
Sbjct: 1   MIEADKSRDVRRGASRFLRHIKQS---------------EKSSKERIKKLSAVNRITLSN 45

Query: 65  EENYEMGCDVADREEVLPSQAPSISGSGASKRFKLPRKQ 103
           EENYEMGCD+ +REE      PS SGS  +KRFKLPRK+
Sbjct: 46  EENYEMGCDIVEREE-----TPSTSGSAIAKRFKLPRKK 79