Jatropha Genome Database

JcCA0075421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075421.10 + phase: 0 
         (99 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014177 clathrin coat assembly protein ap17, putative           184   5e-48
30162.m001274 clathrin coat assembly protein ap19, putative           116   2e-27
30089.m001009 clathrin coat assembly protein ap19, putative           114   1e-26
29912.m005350 AP-4 complex subunit sigma-1, putative                   87   2e-18
29634.m002147 AP-3 complex subunit sigma-1, putative                   86   3e-18

>30170.m014177 clathrin coat assembly protein ap17, putative
          Length = 142

 Score =  184 bits (468), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 91/93 (97%), Positives = 93/93 (100%)

Query: 7   IKFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 66
           ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 67  VYLILDEFILAGELQETSKKAIIERMGELEKLE 99
           VYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 110 VYLILDEFILAGELQETSKKAIIERMGELEKLE 142


>30162.m001274 clathrin coat assembly protein ap19, putative
          Length = 161

 Score =  116 bits (290), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 67/82 (81%)

Query: 7   IKFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 66
           +++R +KV+Y+RYA L+F +C+D  DNEL  LE IH FVEILD +F +VCELDL+FNFHK
Sbjct: 50  VEWRGYKVVYKRYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHK 109

Query: 67  VYLILDEFILAGELQETSKKAI 88
            Y ILDE ++AGELQE+SKK +
Sbjct: 110 AYYILDELLIAGELQESSKKTV 131


>30089.m001009 clathrin coat assembly protein ap19, putative
          Length = 153

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 68/87 (78%)

Query: 7   IKFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 66
           +++R  KV+YRRYAGL+F +C+   DNEL  L+ IH +VEILD +F +VCELDL+FNFHK
Sbjct: 42  VEWRRFKVVYRRYAGLYFCMCIGEEDNELEVLDIIHHYVEILDRYFGSVCELDLIFNFHK 101

Query: 67  VYLILDEFILAGELQETSKKAIIERMG 93
            Y ILDE ++AGELQE+SK+ +I  M 
Sbjct: 102 AYYILDEILIAGELQESSKRTVIRLMS 128


>29912.m005350 AP-4 complex subunit sigma-1, putative
          Length = 143

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 63/91 (69%)

Query: 7   IKFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 66
           ++ R +K++YRRYA LFF + VD  +NELA LE IHL VE +D  F NVCELD++F+  K
Sbjct: 51  VEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEK 110

Query: 67  VYLILDEFILAGELQETSKKAIIERMGELEK 97
            + +L+E ++ G + ETSK  I+  +  ++K
Sbjct: 111 AHFMLEEMVMNGCIVETSKANILAPIQLMDK 141


>29634.m002147 AP-3 complex subunit sigma-1, putative
          Length = 166

 Score = 85.9 bits (211), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 60/88 (68%)

Query: 12  HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 71
            +++Y+ YA L+F    D  +NELA L+ I +FVE LD  F NVCELD+VFN+ K++ IL
Sbjct: 60  SRLVYKHYATLYFVFVYDSCENELAVLDLIQVFVETLDKCFRNVCELDIVFNYSKLHTIL 119

Query: 72  DEFILAGELQETSKKAIIERMGELEKLE 99
           DE I  G++ ETS   +++ + E+ KLE
Sbjct: 120 DEIIFGGQVLETSSTEVMKAVEEISKLE 147