Jatropha Genome Database

JcCA0075411.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075411.40 - phase: 2 /partial
         (59 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014108 40S ribosomal protein S9, putative                      103   2e-23
29813.m001450 40S ribosomal protein S9, putative                      102   4e-23
29822.m003493 40S ribosomal protein S9, putative                      101   7e-23

>30147.m014108 40S ribosomal protein S9, putative
          Length = 197

 Score =  103 bits (256), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/50 (96%), Positives = 50/50 (100%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQRAASKKAS 50
           VGRQVVNIPSFMVR+DSQKHIDFSLTSPFGGGRPGRVKR+NQRAASKKAS
Sbjct: 138 VGRQVVNIPSFMVRIDSQKHIDFSLTSPFGGGRPGRVKRRNQRAASKKAS 187


>29813.m001450 40S ribosomal protein S9, putative
          Length = 196

 Score =  102 bits (254), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/50 (98%), Positives = 49/50 (98%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQRAASKKAS 50
           VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQRAASKK S
Sbjct: 138 VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQRAASKKNS 187


>29822.m003493 40S ribosomal protein S9, putative
          Length = 196

 Score =  101 bits (252), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 48/49 (97%), Positives = 49/49 (100%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQRAASKKA 49
           VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQRAASKK+
Sbjct: 138 VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQRAASKKS 186