Jatropha Genome Database

JcCA0075411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075411.20 + phase: 0 
         (92 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014106 DNA binding protein, putative                           106   2e-24
29822.m003497 transcription regulator, putative                        82   5e-17
30147.m014102 transcription regulator, putative                        77   2e-15
29736.m002007 transcription regulator, putative                        75   5e-15

>30147.m014106 DNA binding protein, putative
          Length = 89

 Score =  106 bits (265), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 66/79 (83%)

Query: 13 KITKNEIIDLILKLQALLPHINQRQDSRVSASKILKETCSYIGKLQREVDDLSEKLSQML 72
          K T++E+ DL+LKLQALLP +NQRQ SRVS SKIL+ETCSYI  LQ E DDLSEKLSQ+L
Sbjct: 11 KFTQDELNDLVLKLQALLPQLNQRQASRVSVSKILQETCSYIRSLQSEADDLSEKLSQLL 70

Query: 73 DSMDISNVDVESLISILLQ 91
          DS +I++VD+E+L S L Q
Sbjct: 71 DSFNIADVDIETLRSNLQQ 89


>29822.m003497 transcription regulator, putative
          Length = 90

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 60/78 (76%)

Query: 13 KITKNEIIDLILKLQALLPHINQRQDSRVSASKILKETCSYIGKLQREVDDLSEKLSQML 72
          +IT ++IIDL+ KL+ LLP I QR+  +VSASK+L+ETC+YI  L REVDDLSE+LSQ+L
Sbjct: 13 RITDDQIIDLVSKLRQLLPEIRQRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLL 72

Query: 73 DSMDISNVDVESLISILL 90
           ++D  + +   + S+++
Sbjct: 73 ATIDADSPEAAIIRSLIM 90


>30147.m014102 transcription regulator, putative
          Length = 91

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 52/69 (75%)

Query: 14 ITKNEIIDLILKLQALLPHINQRQDSRVSASKILKETCSYIGKLQREVDDLSEKLSQMLD 73
          IT ++I+DL+ KLQ LLP I  R+  +VSA+K+L+ETC+YI  L REVDDLSE+LS++L 
Sbjct: 16 ITDDQILDLVSKLQQLLPEIRNRRSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLA 75

Query: 74 SMDISNVDV 82
          + D +   +
Sbjct: 76 TTDTAQAAI 84


>29736.m002007 transcription regulator, putative
          Length = 93

 Score = 75.5 bits (184), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 50/63 (79%)

Query: 14 ITKNEIIDLILKLQALLPHINQRQDSRVSASKILKETCSYIGKLQREVDDLSEKLSQMLD 73
          I+ ++IIDL+ KLQ L+P I  R+  +VSASK+L+ETC+YI  L REVDDLS++LS++L 
Sbjct: 16 ISDDQIIDLVSKLQQLIPEIRNRRSDKVSASKVLQETCNYIKSLHREVDDLSDRLSELLA 75

Query: 74 SMD 76
          S D
Sbjct: 76 STD 78