Jatropha Genome Database

JcCA0074091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0074091.10 - phase: 0 /partial
         (207 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29806.m000944 hypothetical protein                                    127   5e-30

>29806.m000944 hypothetical protein
          Length = 176

 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 62/73 (84%), Positives = 67/73 (91%)

Query: 131 SNDVYDFDTGADKNKKESVVNLVGSRSGTLFAAYLSLALGFLGLTRTSLGAGNVQAILLL 190
           SNDVYDFDTGADKNKKESVVNLVGSRSGT  AAYLSL LGF+GLT TSLGA ++QAILLL
Sbjct: 3   SNDVYDFDTGADKNKKESVVNLVGSRSGTSIAAYLSLGLGFVGLTWTSLGASSMQAILLL 62

Query: 191 ACAVICGYIYQVQ 203
           ACA+ CGYIYQV+
Sbjct: 63  ACAITCGYIYQVR 75