Jatropha Genome Database

JcCA0072641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0072641.10 + phase: 0 /partial
         (127 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29838.m001723 hypothetical protein                                    161   6e-41
29596.m000719 GATA transcription factor, putative                      46   4e-06

>29838.m001723 hypothetical protein
          Length = 313

 Score =  161 bits (408), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 80/120 (66%), Positives = 97/120 (80%), Gaps = 2/120 (1%)

Query: 7   GTLRDLTKGGKQISFDQNEMG--NIKPSTLERENPYANRDXXXXXXXXXXXXLDSDNSVR 64
           GTLRDLTKGG+ +SFDQNE+G  + KPST+E+ENPY N+D            LDS+NS+R
Sbjct: 182 GTLRDLTKGGRHVSFDQNELGTPDFKPSTMEQENPYVNQDEEGSPEESKPVLLDSENSMR 241

Query: 65  PNEQELLETDETPTNPFPMHLENSSVNINDEDLQDTLDDLGNVSSSEFEIPGNFDDQVDI 124
           PN+Q+LLETD+T T+P P H+ENSSVN++DED Q+TLD LGNVS SEFEIPGNFDDQVDI
Sbjct: 242 PNDQDLLETDDTVTDPLPTHVENSSVNLDDEDFQETLDGLGNVSGSEFEIPGNFDDQVDI 301


>29596.m000719 GATA transcription factor, putative
          Length = 327

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 29/116 (25%)

Query: 7   GTLRDLTKGGKQISFDQNEMG---NIKPSTLERENPYANRDXXXXXXXXXXXXLDSDNSV 63
           GTLRDL+KGG+  S DQ E     ++KPS +E E    N+D                   
Sbjct: 238 GTLRDLSKGGRNASTDQIEPETPIDVKPSIMEGEF-SGNQD------------------- 277

Query: 64  RPNEQELLETDETPTNPFPMHLENSSVNINDEDLQDTLDDLGNVSSSEFEIPGNFD 119
              E  L E  E  T+  PM + +SS    D+D Q+ L +L N S ++ +IP NFD
Sbjct: 278 ---EHVLQEASEDLTSTLPMRVVHSSA---DDDDQEPLVELANPSDADLDIPSNFD 327