Jatropha Genome Database

JcCA0071981.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071981.20 - phase: 2 /partial
         (283 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29681.m001323 cdc6, putative                                          468   e-132
30169.m006435 origin recognition complex subunit, putative             97   7e-21

>29681.m001323 cdc6, putative
          Length = 523

 Score =  468 bits (1205), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/272 (83%), Positives = 243/272 (89%), Gaps = 14/272 (5%)

Query: 1   LIIADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLQSLNCKPMV 60
           LIIADELDYLITKDRAVLHDLFMLTTFPFSRCILIG+ANAIDLADRFLPRLQSLNCKPMV
Sbjct: 225 LIIADELDYLITKDRAVLHDLFMLTTFPFSRCILIGIANAIDLADRFLPRLQSLNCKPMV 284

Query: 61  VTFRAYSKEQILRILQERLMALPWTTFHPPALELCARKVAAASGDMRKALCVCRSAIEIL 120
           +TFRAYSK+QILRILQERLMAL WT FHP ALELCARKVAAASGDMRKALCVCRSA+EIL
Sbjct: 285 ITFRAYSKDQILRILQERLMALSWTIFHPQALELCARKVAAASGDMRKALCVCRSAVEIL 344

Query: 121 EAELRESTGNLNSFAVDKELSHQQTAPAGEFFEKQDYSIVRIDHMAVALSKAYRSPIVDT 180
           EAEL+EST N+NSF ++KEL  QQ              IVRIDHMAVALSKAYRSP+VDT
Sbjct: 345 EAELKESTSNMNSFELEKELPDQQ--------------IVRIDHMAVALSKAYRSPVVDT 390

Query: 181 IQSLPQHQQIILCAAVKFFRGGKKDTIVGELNKYYIDVCKSTMIPPVGISEFLSMCRVLN 240
           IQSLPQHQQ+ILC+AVKFFRGGKKDT +GELNK Y D+CKSTMIPPVG  EFL+MC VLN
Sbjct: 391 IQSLPQHQQVILCSAVKFFRGGKKDTTIGELNKSYADICKSTMIPPVGFLEFLNMCTVLN 450

Query: 241 DQGLLKLGQSRDDKLRRLMLKVDAADIIFALQ 272
           DQGLLKLGQSRDDKLRR+ LKVDAADI FALQ
Sbjct: 451 DQGLLKLGQSRDDKLRRVTLKVDAADITFALQ 482


>30169.m006435 origin recognition complex subunit, putative
          Length = 844

 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 134/266 (50%), Gaps = 25/266 (9%)

Query: 11  ITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLQSLNCKPMVVTFRAYSKEQ 70
           +T++++VL+++    T P S+ I+IG+AN +DL ++ LPR+ S       + F  Y+ +Q
Sbjct: 594 VTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISS-RMGIQRLCFGPYNYQQ 652

Query: 71  ILRILQERLMALPWTTFHPPALELCARKVAAASGDMRKALCVCRSAIEILEAELRESTGN 130
           +  I+  RL  +    F   A+E  +RKVAA SGD R+AL +CR A EI +  L++ + +
Sbjct: 653 LQEIISSRLKGI--DAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYRLKKLSSD 710

Query: 131 LNSFAVDKELSHQQTAPAGEFFEKQDYSIVRIDHMAVALSKAYRSPIVDTIQSLPQHQQI 190
                          +PAG+        +V +  +  A+ + +++P +  +++  +  +I
Sbjct: 711 --------------PSPAGK-------DLVGMSDVEAAIQEMFQAPHIQVMKNCSKLSKI 749

Query: 191 ILCAAV-KFFRGGKKDTIVGELNKYYIDVCKSTMIPPVGISEFLSMCRVLNDQGLLKLGQ 249
            L A V + ++ G  +T   +L      +C S      G    L +  +L +  +++   
Sbjct: 750 FLTAMVYELYKTGMGETNFEKLAMTVSCLCTSNGEAFAGWDTLLKVGCMLGESRIIQCEP 809

Query: 250 SRDDKLRRLMLKVDAADIIFALQGVR 275
               +L++L L   + D+ FAL+G +
Sbjct: 810 GARHRLQKLQLNFPSDDVAFALKGSK 835