Jatropha Genome Database

JcCA0071981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071981.10 + phase: 0 /pseudo/partial
         (250 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29669.m000815 60S acidic ribosomal protein P0, putative               295   1e-80
29681.m001324 60S acidic ribosomal protein P0, putative               289   1e-78

>29669.m000815 60S acidic ribosomal protein P0, putative
          Length = 320

 Score =  295 bits (755), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 142/169 (84%), Positives = 159/169 (94%)

Query: 41  VGAPARVGLIAPIDVVVPPGPTGLDPSMTSFFQALNIPTKINKGSVEIVTAVDLIKKGEK 100
           VGAPARVGL+APIDVVVPPG TGLDPS TSFFQ LNIPTKINKG+VEI+T V+LIKKG+K
Sbjct: 110 VGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDK 169

Query: 101 VGSSESALLAKLQIRPFSYGLIVFSVYDNGSVFSPEVLDLTEDDLVERFVNGVSMVTSLS 160
           VGSSE+ALLAKL IRPFSYGLIV SVYDNGSVFSPEVLDLTEDDL+ +F  GVSMVTSL+
Sbjct: 170 VGSSEAALLAKLGIRPFSYGLIVLSVYDNGSVFSPEVLDLTEDDLIGKFAIGVSMVTSLA 229

Query: 161 LSISFPTLAAAPHMFLNAYKNVLSVSVATEYTFPQAEQVKEFLEDPSKF 209
           L+IS+PTLAAAPHMF+NAYKN L+++VATEYTFPQAE+VKE+LEDPSKF
Sbjct: 230 LAISYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLEDPSKF 278


>29681.m001324 60S acidic ribosomal protein P0, putative
          Length = 323

 Score =  289 bits (739), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 139/169 (82%), Positives = 158/169 (93%)

Query: 41  VGAPARVGLIAPIDVVVPPGPTGLDPSMTSFFQALNIPTKINKGSVEIVTAVDLIKKGEK 100
           VGAPARVGLIAPIDVVVPPG TGLDPS TSFFQ LNIPTKINKG+VEI+T VD+IKKGEK
Sbjct: 110 VGAPARVGLIAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVDIIKKGEK 169

Query: 101 VGSSESALLAKLQIRPFSYGLIVFSVYDNGSVFSPEVLDLTEDDLVERFVNGVSMVTSLS 160
           VGSSESALLAKL IRPFSYGL+V +VYD+GSVFSPEVLDLT+DDLV +F +GVSMV SLS
Sbjct: 170 VGSSESALLAKLGIRPFSYGLVVLTVYDSGSVFSPEVLDLTDDDLVAKFASGVSMVASLS 229

Query: 161 LSISFPTLAAAPHMFLNAYKNVLSVSVATEYTFPQAEQVKEFLEDPSKF 209
           LS+SFPT+AAAPHMF+N YKNVLSV++ +EY+FPQAE+VKE+L+DPSKF
Sbjct: 230 LSLSFPTIAAAPHMFVNGYKNVLSVAMVSEYSFPQAEKVKEYLKDPSKF 278