Jatropha Genome Database

JcCA0071791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071791.10 - phase: 0 /pseudo
         (411 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004541 Protein CHMP7, putative                                 493   e-140

>30076.m004541 Protein CHMP7, putative
          Length = 438

 Score =  493 bits (1270), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/438 (60%), Positives = 313/438 (71%), Gaps = 27/438 (6%)

Query: 1   MDSSVVREFIKKEVPDWDDEVIATARFKAFSGQRSDWESKYLFWRDLILKVARHLGHLAI 60
           MDSS+V EFI KEV DW++EVIATARFKAFSGQRSDWE KY FWR+LILK+ARHLG   I
Sbjct: 1   MDSSMVMEFICKEVSDWNEEVIATARFKAFSGQRSDWEPKYQFWRNLILKIARHLGLFTI 60

Query: 61  RPSQVKNEWFNRGGLTPLCLDHVLFIMYSEGDIIRSVDLVDPRNGGLSQFFRKVRNLVVR 120
           RP QVKNEWFNRGGLTPLCLDHVLF+MY+EGDIIR+VD+VD  +G  SQ +RKV NLV+R
Sbjct: 61  RPCQVKNEWFNRGGLTPLCLDHVLFLMYTEGDIIRNVDVVDATSGRFSQLYRKVTNLVIR 120

Query: 121 STTSPEVMLEDCVILTVLLREKATEVIKFYLKVIGHLHALLLXRSFRTCV----EHQMKH 176
           STT+P+++LED +ILT LL+EKA +VIK   +       ++  R F+       E  +  
Sbjct: 121 STTTPDLLLEDNLILTPLLKEKADQVIKLLSENHWTTSCVVTMRKFQDMCGGPNEASVVL 180

Query: 177 LQFXVI----YLDSGKHAISRFIRRNXXS-------------LHLIWTTEKLQKQVDVID 219
             F  +    YL   K      I+ +  S             LHLIWT EKLQ+Q+DVID
Sbjct: 181 SYFSGVGKAQYLSVCKKEFVEGIKVSLSSALVPAISSLDFDVLHLIWTAEKLQQQIDVID 240

Query: 220 QRYEISRKLALASLKSGNKKMALRHAREMKLASENREKCTSLLNRVDGVLNIIMNAESTK 279
           QRYE+SR  ALA LKSGNKKMALRHAR+MKLAS++REKCTSL NRV+ VLNII +AESTK
Sbjct: 241 QRYELSRNSALAYLKSGNKKMALRHARDMKLASDSREKCTSLFNRVEEVLNIIADAESTK 300

Query: 280 KVTEAIQIGAQAMKQNKITXXXXXXXXXXXXXSIDSQKQVEKALESTPSYTGXXXXXXXX 339
           KVTEAIQIGAQAMKQNKIT             +IDSQKQVEKALESTPSYT         
Sbjct: 301 KVTEAIQIGAQAMKQNKITVEEVDLCLEELEENIDSQKQVEKALESTPSYTVIEDEDIEE 360

Query: 340 XFKKLEVEIGSENLQSHVPRIGVSSISGERDNWGPSDSLSGAFSNLKLQDASARESMNQ- 398
            FKKLE+E+G+ +LQS VPRIG+SS SGE DN   +DSLS A SNLKLQDA   +  +Q 
Sbjct: 361 EFKKLEMEVGTVDLQSPVPRIGMSSTSGETDNSVSTDSLSDALSNLKLQDALPGDCTDQV 420

Query: 399 -----RTNESKNVTLEAA 411
                RTN+SKN+TLEAA
Sbjct: 421 PLEATRTNDSKNLTLEAA 438