Jatropha Genome Database

JcCA0071111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071111.10 - phase: 0 /partial/short
         (46 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30008.m000797 3-isopropylmalate dehydratase, putative                  60   2e-10
30008.m000798 3-isopropylmalate dehydratase, putative                  57   2e-09

>30008.m000797 3-isopropylmalate dehydratase, putative
          Length = 510

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 35/49 (71%), Gaps = 3/49 (6%)

Query: 1   MAMTLKILARAAEKTQLIPGENDWDNVDDPLHF---FPGAFGIFKREFG 46
           M MT KILARA+EK+QL PGEN W NVD  +      PG+ GIFKREFG
Sbjct: 68  MTMTEKILARASEKSQLSPGENVWVNVDVLMTHDVCGPGSIGIFKREFG 116


>30008.m000798 3-isopropylmalate dehydratase, putative
          Length = 621

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 33/49 (67%), Gaps = 3/49 (6%)

Query: 1   MAMTLKILARAAEKTQLIPGENDWDNVDDPLHF---FPGAFGIFKREFG 46
           M  T KILARA+EK QL PGEN W NVD  +      PG+F IFKREFG
Sbjct: 205 MTTTEKILARASEKPQLGPGENVWVNVDILMTHDVCGPGSFAIFKREFG 253