Jatropha Genome Database

JcCA0070381.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0070381.20 - phase: 0 
         (189 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014300 conserved hypothetical protein                          159   6e-40
30170.m014296 conserved hypothetical protein                          145   1e-35
30170.m014297 conserved hypothetical protein                          145   1e-35
30170.m014306 ubiquitin-protein ligase, putative                       94   3e-20
29830.m001399 conserved hypothetical protein                           57   6e-09
28629.m000548 transcription regulation, putative                       57   7e-09
29683.m000480 conserved hypothetical protein                           55   1e-08
29804.m001545 conserved hypothetical protein                           55   2e-08
30008.m000790 conserved hypothetical protein                           50   4e-07

>30170.m014300 conserved hypothetical protein
          Length = 402

 Score =  159 bits (403), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 78/121 (64%), Positives = 89/121 (73%), Gaps = 1/121 (0%)

Query: 2   SLWAQLPPEFLQVIAEKHTNYVDYYVCTRAVCKSWYAAIQKRXXXXXXXXXXXXXXXXXX 61
           S WA+LPPE LQVIA+KHTNYVDY V TRAVC SW +AI KR                  
Sbjct: 3   STWAELPPELLQVIADKHTNYVDYLV-TRAVCGSWQSAIAKRPHNHLLCQLPFLLLPYYQ 61

Query: 62  XXXDHRGFYSMSNDKTYRLELPEAFEKRCCGSSHGWLIMVEETPTIFLLNPLTRTRIELP 121
              D RGFY++S+DK Y LELPEA+EKRCCGSSHGWLIMVE++P+IFLLNPLTR RIELP
Sbjct: 62  NNPDRRGFYNISDDKIYVLELPEAYEKRCCGSSHGWLIMVEDSPSIFLLNPLTRERIELP 121

Query: 122 S 122
           +
Sbjct: 122 A 122



 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)

Query: 115 RTRIELPSYDYRTYKFVAYKLDTSKSIWLELDSLGNRILFLGWNCFHSISS-NYENSKGN 173
           R R  +P Y+Y+T +F  YKLD     W + +SLG+++LFLG N   SIS+ +Y   KGN
Sbjct: 269 RYRKVVPDYEYKTERFEIYKLDDGG--WKKKESLGDKMLFLGGNGSLSISALDYSKCKGN 326

Query: 174 CIYFTDDNFMSCSDF 188
           CIYFTDD    C D+
Sbjct: 327 CIYFTDDYIRLCKDY 341


>30170.m014296 conserved hypothetical protein
          Length = 406

 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 87/122 (71%), Gaps = 2/122 (1%)

Query: 1   MSLWAQLPPEFLQVIAEKHTNYVDYYVCTRAVCKSWYAAIQKRXXXXXXXXXXXXXXXXX 60
           MS W++LP E LQ I +K +NYVDY + TRAVCKSW++AI K+                 
Sbjct: 1   MSNWSELPQELLQTITQKQSNYVDY-ISTRAVCKSWWSAIPKKPHDLLCQLPWLLLPYHK 59

Query: 61  XXXXDHRGFYSMSNDKTYRLELPEAFEKRCCGSSHGWLIMVEETPTIFLLNPLTRTRIEL 120
               +HRGFY++++ KTY LELPE  EKRCCGSSHGWL+MVE+TP+IFLLNPLT+ RIEL
Sbjct: 60  NNP-NHRGFYNLADGKTYHLELPETIEKRCCGSSHGWLVMVEDTPSIFLLNPLTKARIEL 118

Query: 121 PS 122
           PS
Sbjct: 119 PS 120



 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 122 SYDYRTYKFVAYKLDTSKSIWLELDSLGNRILFLGWNCFHSISS-NYENSKGNCIYFTDD 180
            Y+Y+T+KF+ YKLD S S WLELD LG+ + FLGWNCFHSIS+ NY N  GNCIYFTDD
Sbjct: 278 GYEYQTHKFMVYKLDASSSNWLELDGLGDMLSFLGWNCFHSISTQNYRNYSGNCIYFTDD 337

Query: 181 NFMSCSDFP 189
            F+  SDFP
Sbjct: 338 KFIVGSDFP 346


>30170.m014297 conserved hypothetical protein
          Length = 406

 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/122 (58%), Positives = 87/122 (71%), Gaps = 2/122 (1%)

Query: 1   MSLWAQLPPEFLQVIAEKHTNYVDYYVCTRAVCKSWYAAIQKRXXXXXXXXXXXXXXXXX 60
           MS W++LP E LQ I +K TNYVDY + TRAVCKSW++AI K+                 
Sbjct: 1   MSSWSELPQELLQTITQKQTNYVDY-ISTRAVCKSWWSAIPKKPHDLLCRLPWLLLPHHK 59

Query: 61  XXXXDHRGFYSMSNDKTYRLELPEAFEKRCCGSSHGWLIMVEETPTIFLLNPLTRTRIEL 120
               +HRGFY+ S+ KTY LELPE  +KRCCGSSHGWL+MVE+TP+IFLLNPLT++RIEL
Sbjct: 60  DNP-NHRGFYNPSDGKTYHLELPETVDKRCCGSSHGWLVMVEDTPSIFLLNPLTKSRIEL 118

Query: 121 PS 122
           PS
Sbjct: 119 PS 120



 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 52/68 (76%), Gaps = 1/68 (1%)

Query: 122 SYDYRTYKFVAYKLDTSKSIWLELDSLGNRILFLGWNCFHSISS-NYENSKGNCIYFTDD 180
            Y+Y+T+KF+ YKLD+S S W +LD LG+ I FLGWNCF SIS+ N  N  GNCIYFTDD
Sbjct: 278 GYEYQTHKFIVYKLDSSSSNWSKLDGLGDMIFFLGWNCFDSISAHNCGNCSGNCIYFTDD 337

Query: 181 NFMSCSDF 188
           NF+  SDF
Sbjct: 338 NFIVDSDF 345


>30170.m014306 ubiquitin-protein ligase, putative
          Length = 398

 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 3/120 (2%)

Query: 4   WAQLPPEFLQVIAEKHTNYVDYYVCTRAVCKSWYAAIQKRXXXXXXXXX-XXXXXXXXXX 62
           W+QLPPE +++I++  T Y DY + +RAVC +W  +I K                     
Sbjct: 5   WSQLPPELIEIISKGLTIYSDY-LYSRAVCHAWRFSIPKTPNHLPPQLPWLMLPQSQSQS 63

Query: 63  XXDHRGFYSMSNDKTYRLELPE-AFEKRCCGSSHGWLIMVEETPTIFLLNPLTRTRIELP 121
               R F+S+S +K + L LPE ++ KR CGSSHGWL+++++TPTI L+NPLTR ++ LP
Sbjct: 64  NQSRRAFFSLSTNKFHFLNLPEVSYRKRHCGSSHGWLMILDDTPTILLINPLTRAKLSLP 123



 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 121 PSYDYRTYKFVAYKLDTSKSIWLELDSLGNRILFLGWNCFHSISS-NYENSKGNCIYFTD 179
           P   YRT +F  ++LD +   WL + +LG++ LF+G N   S+S+ ++    GNCIY+TD
Sbjct: 286 PHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKALFIGENSSLSLSATDFSGCMGNCIYYTD 345

Query: 180 D 180
           D
Sbjct: 346 D 346


>29830.m001399 conserved hypothetical protein
          Length = 395

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 126 RTYKFVAYKLDTSKSIWLELDSLGNRILFLGWNCFHSISSN-YENSKGNCIYFTDDN 181
           R   F  +KLD     W++++SLG+R+  LG +C  SISS  +   KGNCIYFTDD+
Sbjct: 296 RATDFRVHKLDEEWGTWIDVNSLGDRVFVLGIDCSFSISSGEFVGGKGNCIYFTDDD 352


>28629.m000548 transcription regulation, putative
          Length = 376

 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 11/135 (8%)

Query: 1   MSLWAQLPPEFLQVIAEKHTNYVDYYVCTRAVCKSWY-AAIQKRXXXXXXXXXXXXXXXX 59
           +  W+ LP E L++I    T  ++  +    VCK W+ AAI  R                
Sbjct: 33  LQTWSDLPIELLELIFCHLT--LEDNIHASVVCKRWHTAAISVRVVNKSPWLMYFPKYGN 90

Query: 60  XXXXXDHRGFYSMSNDKTYRLELPEAFEKRCCGSSHGWLIMVEE-TPTIFLLNPLTRTRI 118
                    FY  +  KTY LELPE +  R C +  GWL++    T  +F  NP T+  I
Sbjct: 91  LYE------FYDPAQRKTYSLELPELYWSRICYTKDGWLLLYRPITHRVFFFNPFTKKMI 144

Query: 119 ELPSYDYRTYKFVAY 133
           +LP ++  TY+ VA+
Sbjct: 145 KLPRFEL-TYQIVAF 158


>29683.m000480 conserved hypothetical protein
          Length = 339

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 126 RTYKFVAYKLDTSKSIWLELDSLGNRILFLGWNCFHSIS-SNYENSKGNCIYFTDDNFMS 184
           RT +F  +KLD     W+E+ SLG+R+LFLG +   S S S+    KGNCI+F D+ F S
Sbjct: 226 RTVRFKVFKLDKEAQTWIEVKSLGDRVLFLGDDSTFSASVSDLSGCKGNCIFFVDNFFYS 285


>29804.m001545 conserved hypothetical protein
          Length = 377

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 67  RGFYSMSNDKTYRLELPEAFEKRCC---GSSHGWLIMVEETPTIFLLNPLTRTRIELPSY 123
           +G   +  D  + L +    +KR      S H    +VE    + L+  ++R  I    Y
Sbjct: 233 QGTLVVIEDIDFDLRITALGKKRSVPSVSSMHFKEFLVESEGMVLLVFLISRNSINTVDY 292

Query: 124 DYRTYKFVAYKLDTSKSIWLELDSLGNRILFLGWNCFHSISSNYENSKGNCIYFT 178
                    Y+L+T+K  W++ +SLG R LFLG NC  S+S++    +GNC+YF+
Sbjct: 293 ------VEVYQLNTAKLAWIKKESLGERTLFLGSNCCMSVSASRVGCRGNCVYFS 341


>30008.m000790 conserved hypothetical protein
          Length = 102

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 39/56 (69%), Gaps = 5/56 (8%)

Query: 130 FVAYKLDTSKSIWLELDSLGNRILFLGWNCFHSISSNYENSKG---NCIYFTDDNF 182
           F  Y+LD+S+  W+E++SL N++LFLG N  HS+S + ++  G   N IYFTDDN 
Sbjct: 2   FHVYRLDSSEQNWVEVESLNNQVLFLGMN--HSMSLSAQDFSGCDRNSIYFTDDNL 55