Jatropha Genome Database

JcCA0070381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0070381.10 - phase: 0 /pseudo/partial
         (146 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014296 conserved hypothetical protein                           70   3e-13
30170.m014297 conserved hypothetical protein                           70   4e-13
30170.m014300 conserved hypothetical protein                           58   1e-09
30170.m014306 ubiquitin-protein ligase, putative                       48   1e-06

>30170.m014296 conserved hypothetical protein
          Length = 406

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 36/41 (87%)

Query: 2  MSMWSELPPELLRTITQIQANYVDYLSIRAVCKSWRSAIPR 42
          MS WSELP ELL+TITQ Q+NYVDY+S RAVCKSW SAIP+
Sbjct: 1  MSNWSELPQELLQTITQKQSNYVDYISTRAVCKSWWSAIPK 41


>30170.m014297 conserved hypothetical protein
          Length = 406

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 35/41 (85%)

Query: 2  MSMWSELPPELLRTITQIQANYVDYLSIRAVCKSWRSAIPR 42
          MS WSELP ELL+TITQ Q NYVDY+S RAVCKSW SAIP+
Sbjct: 1  MSSWSELPQELLQTITQKQTNYVDYISTRAVCKSWWSAIPK 41


>30170.m014300 conserved hypothetical protein
          Length = 402

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 29/40 (72%)

Query: 3  SMWSELPPELLRTITQIQANYVDYLSIRAVCKSWRSAIPR 42
          S W+ELPPELL+ I     NYVDYL  RAVC SW+SAI +
Sbjct: 3  STWAELPPELLQVIADKHTNYVDYLVTRAVCGSWQSAIAK 42


>30170.m014306 ubiquitin-protein ligase, putative
          Length = 398

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 28/39 (71%)

Query: 5  WSELPPELLRTITQIQANYVDYLSIRAVCKSWRSAIPRS 43
          WS+LPPEL+  I++    Y DYL  RAVC +WR +IP++
Sbjct: 5  WSQLPPELIEIISKGLTIYSDYLYSRAVCHAWRFSIPKT 43