Jatropha Genome Database

JcCA0068421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0068421.10 + phase: 0 
         (91 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011225 conserved hypothetical protein                           95   7e-21

>30190.m011225 conserved hypothetical protein
          Length = 942

 Score = 94.7 bits (234), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 62/77 (80%), Gaps = 4/77 (5%)

Query: 6  PNSNMLKTSLSKNSVPRSPMPKSPLPRSPVPKSPEFYEKYKSRCAYSLMSFFHFRQRRSK 65
          P S ++KTS+SK+S+P+SPM KSP+P SP+ KSP  YEKYKSRCAY    FF+F +RRSK
Sbjct: 21 PKSPVVKTSISKSSMPKSPMQKSPMPNSPMQKSP-IYEKYKSRCAY---GFFNFLRRRSK 76

Query: 66 KLISDTDKRCLKRHALG 82
          KLI+D D+R + RHALG
Sbjct: 77 KLIADADRRRISRHALG 93