Jatropha Genome Database

JcCA0067761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0067761.10 - phase: 0 
         (110 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004628 conserved hypothetical protein                           52   6e-08

>29929.m004628 conserved hypothetical protein
          Length = 137

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 57/146 (39%), Gaps = 45/146 (30%)

Query: 1   MEASHKGKGFLRGXXXXXXXXXXXXXXXXXXFGPTGSMESSAQYRSKVSPSPYT------ 54
           ME +HKG+GF+R                        +M+      +KVSPSPYT      
Sbjct: 1   MEINHKGRGFMRSKLAKAKSFFRVNHSK------PNTMQVQCISNTKVSPSPYTYSPNGS 54

Query: 55  ----------------------------PYSVNFPIXXXXXXXXXXXXRRSFIDYGEDEN 86
                                         S++FP               S   YG DEN
Sbjct: 55  NNSSSIQKIMSSAQPCPLPVQHSSRVTPTCSMDFPTGQSIQKVSASCQLGS---YGGDEN 111

Query: 87  VDMKASTFISNVRERFKL--VDSESW 110
           VD+KA+++IS VRERFKL  +DSE+W
Sbjct: 112 VDIKAASYISYVRERFKLEKLDSEAW 137