Jatropha Genome Database

JcCA0066701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066701.10 - phase: 0 /partial
         (54 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29815.m000502 conserved hypothetical protein                           50   2e-07

>29815.m000502 conserved hypothetical protein
          Length = 499

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 34/63 (53%), Gaps = 9/63 (14%)

Query: 1  MEHNGLAGGIFSGMGSGVLGLEM--------XXXXXXXXXXXXXXXXXXIVAYAH-HESD 51
          M HNGL GGIFSGMGSG+LGLEM                          +VAYAH HESD
Sbjct: 1  MVHNGLPGGIFSGMGSGLLGLEMPLHQQQQQQQQNPQNPQNTHQIHHPQMVAYAHNHESD 60

Query: 52 HHP 54
          H+P
Sbjct: 61 HNP 63