Jatropha Genome Database

JcCA0066671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066671.20 + phase: 0 /pseudo
         (501 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29641.m000398 nascent polypeptide associated complex alpha subun...    67   3e-11
29852.m002022 conserved hypothetical protein                           53   3e-07
29949.m000119 conserved hypothetical protein                           52   5e-07

>29641.m000398 nascent polypeptide associated complex alpha subunit,
           putative
          Length = 687

 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 15/191 (7%)

Query: 53  LGALAERWWDTTNTFHFSWGEMTMTPVDFSVITGIPFGIRPIELYDDWRTEVSPDRMVEL 112
           + AL ER++  T+T H    E+  TP+ +++ITGI FG  P+   D     ++P+  ++L
Sbjct: 266 MSALVERYFSETHTLHLGTFEIGPTPLAWTMITGITFGGDPLNPPD-----ITPEECIKL 320

Query: 113 IGIDLPRIVGPGSATPALSVSRRWLYLQAP-GIYARHRRGELTASQVARFTLLLMFASTF 171
           +G     +VG  S     S  +  L +  P  +  R +        + R  +L +  S F
Sbjct: 321 LG-----LVGTESEG-FFSQGKLKLDVLCPLTLDFRKKPANSDLEWMFRRLILYLVGSCF 374

Query: 172 WSNRKERFNPSILKSLENLAHLTEYDWAGAILSRMYDDMCDLSRSHCK--LSGTYYFWEI 229
           +S         ++ ++ N+  +++YDW  A  S     M   + S C+   SG Y F  +
Sbjct: 375 FSGPDMMIPIRLVSAMSNIQKISQYDWGAATFSAFLRGMRHKT-SECRGTFSGFYPFLLL 433

Query: 230 WAFEYFPYTRP 240
           WA+E+ PY RP
Sbjct: 434 WAYEHIPYQRP 444


>29852.m002022 conserved hypothetical protein
          Length = 115

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 54/101 (53%), Gaps = 8/101 (7%)

Query: 36  LGYLRHFDACRNSHKELLGALAERWWDTTNTFHFSWGEMTMTPVDFSVITGIPFGIRPIE 95
           LG L  F    N+    L AL ERW DTT+TF   + EMT+TP+ F+ +TG  FG   + 
Sbjct: 10  LGTLSGFKPKNNA--TALTALLERWSDTTHTFVLHFREMTITPMHFTALTGTRFGGVSVP 67

Query: 96  LYDDWRTEVSPDRMVELIG----IDLPRIVGPGSATPALSV 132
           L  D R  VSP  + +L G    I   R +  GS  PALS+
Sbjct: 68  L--DGRPVVSPTLIPQLPGCSPFIKDDRKLRLGSPLPALSL 106


>29949.m000119 conserved hypothetical protein
          Length = 918

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 88/227 (38%), Gaps = 39/227 (17%)

Query: 30  IINPSRLGYLRHFDACRNSHKELLGALAERWWDTTNTFHFSWGEMTMTPVDFSVITGIPF 89
           ++  +  GYLR   A    +  L+ AL ERW   TNTFHF  GEMT+T  D +++ G+  
Sbjct: 54  LVEKAGFGYLRKIPAISLDNP-LISALVERWRRETNTFHFGVGEMTVTLQDVALLLGLAI 112

Query: 90  GIRPIELYDDWRTEVSPDRMVELIGID-------LPRIVGPGSATPALS---VSRRWLYL 139
             RP+                  IGI          R++G    +   S   V   WL  
Sbjct: 113 DGRPV------------------IGITHTTCSLVCERLLGKAPDSSYASGGMVKLSWLKE 154

Query: 140 QAPGIYARHRRGELTASQVARFT---LLLMFASTFWSNRKERFNPSI-LKSLENLAHLTE 195
                Y  H        +V R T   LL +  ST +S       P + L   EN      
Sbjct: 155 -----YFSHCPENAPIEEVERCTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFENFEEAGN 209

Query: 196 YDWAGAILSRMYDDMCDLS-RSHCKLSGTYYFWEIWAFEYFPYTRPE 241
           + W  A L+ +Y  + +   +S   + G     + W++ +    RP+
Sbjct: 210 FAWGAAALAFLYRALGNACVKSQSTICGCLTLLQCWSYFHLNIGRPK 256