Jatropha Genome Database

JcCA0066671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066671.10 - phase: 2 /partial
         (78 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29684.m000326 conserved hypothetical protein                          134   1e-32
30000.m000374 conserved hypothetical protein                          134   1e-32

>29684.m000326 conserved hypothetical protein
          Length = 400

 Score =  134 bits (336), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/65 (93%), Positives = 64/65 (98%)

Query: 1   FFNSHDREFHVASLPYKPDFKVMPEGWDGTIKDLDEVHYEISMKEDEMLYQEFVQKMNFN 60
           FF SHD+EFHVASLPYKPDFKVMPEGWDGTIKDLDEVHYEISMKEDEMLYQEFVQKMNFN
Sbjct: 266 FFKSHDQEFHVASLPYKPDFKVMPEGWDGTIKDLDEVHYEISMKEDEMLYQEFVQKMNFN 325

Query: 61  KMKVS 65
           KMK++
Sbjct: 326 KMKMA 330


>30000.m000374 conserved hypothetical protein
          Length = 364

 Score =  134 bits (336), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 60/64 (93%), Positives = 64/64 (100%)

Query: 1   FFNSHDREFHVASLPYKPDFKVMPEGWDGTIKDLDEVHYEISMKEDEMLYQEFVQKMNFN 60
           FFNSHD+EFH+ASLPYKPDFKVMPEGWDGTIKDLDEVHYEISMKED+MLY+EFVQKMNFN
Sbjct: 266 FFNSHDQEFHIASLPYKPDFKVMPEGWDGTIKDLDEVHYEISMKEDDMLYEEFVQKMNFN 325

Query: 61  KMKV 64
           KMKV
Sbjct: 326 KMKV 329