Jatropha Genome Database

JcCA0066651.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066651.20 + phase: 0 /pseudo
         (368 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29805.m001487 DNA replication licensing factor MCM8, putative         605   e-173
27967.m000046 minichromosome maintenance protein, putative             78   7e-15
30076.m004661 DNA replication licensing factor MCM7, putative          74   1e-13
30131.m007101 DNA replication licensing factor MCM4, putative          68   6e-12
29693.m002033 DNA replication licensing factor MCM3, putative          64   1e-10
30128.m008586 DNA replication licensing factor MCM2, putative          60   2e-09
29806.m000936 Minichromosome maintenance protein MCM, putative         57   1e-08

>29805.m001487 DNA replication licensing factor MCM8, putative
          Length = 757

 Score =  605 bits (1560), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 289/333 (86%), Positives = 307/333 (92%)

Query: 1   MYGSKGESTSRKKHHRPMTDASNSMEILAVYFPTNDFSVDEDKLMLISDLIHFFSTSLGQ 60
           MYG K E TS    HR M  ASNS +ILA YFP+ND +VDEDKL+LIS LI+FFSTS GQ
Sbjct: 1   MYGRKVEHTSMNNQHRWMNQASNSTDILAAYFPSNDMTVDEDKLILISKLINFFSTSRGQ 60

Query: 61  DLASQVKEENGAFFLPIDFEQFRKICDVEEFYVILEEKPKVALSCLGAAVHKVLSTKCEE 120
           DLASQVKEENGA FLPIDF+QFRKICDV+EFY ILEEKPK+ALSCLGAA+HKVL  K EE
Sbjct: 61  DLASQVKEENGALFLPIDFQQFRKICDVDEFYAILEEKPKIALSCLGAALHKVLLAKLEE 120

Query: 121 NILQVGAKINIRLHNYPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEK 180
           NIL+ GAKINIRLHNYPESMIALKNLKAAYIDKLVSVRGTVVK+STVRPLVVQMSFDCEK
Sbjct: 121 NILEDGAKINIRLHNYPESMIALKNLKAAYIDKLVSVRGTVVKLSTVRPLVVQMSFDCEK 180

Query: 181 CKSNIARIFPDGKFSPPTICNLNGCKSRTFHPIRSSAQAVDFQKIRIQELLRSEDHEEGR 240
           CKSNI R+FPDGKFSPPTICNLNGCKS+TFHPIRSSAQA+DFQKIRIQELLRSEDHEEGR
Sbjct: 181 CKSNIIRVFPDGKFSPPTICNLNGCKSKTFHPIRSSAQAIDFQKIRIQELLRSEDHEEGR 240

Query: 241 VPRTVECELTEDLVDACIPGDVVTVTGIIRTINNYVDIGGGKLKGKNQGFYYLYLEGVSI 300
           VPRTVECELTEDLVDACIPGDVVTVTGIIRTINNYVDIGGGK KGKNQGFYYLYLE +SI
Sbjct: 241 VPRTVECELTEDLVDACIPGDVVTVTGIIRTINNYVDIGGGKSKGKNQGFYYLYLEVISI 300

Query: 301 KNSKSQSTSFDFQDSKSNARATELSDLFSFSPR 333
           KNSKSQSTS D QD++SNARATELSDLFSFSP+
Sbjct: 301 KNSKSQSTSSDMQDARSNARATELSDLFSFSPK 333


>27967.m000046 minichromosome maintenance protein, putative
          Length = 713

 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 4/134 (2%)

Query: 129 INIRLHNYPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARI 188
           IN+  +N P S   L+ L  A I KLVSV G V + S VRP ++Q +F C  C   I  +
Sbjct: 109 INVAFYNIPFSK-RLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFRCLDCGGVIKNV 167

Query: 189 FPDGKFSPPTICNLNGCKSRT-FHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVEC 247
               K++ PTIC    C +R  +  +R  ++  D+Q++R+QE   S++   G +PR+++ 
Sbjct: 168 EQQFKYTEPTICVNATCNNRMKWALLRQESKFADWQRVRMQET--SKEIPAGSLPRSLDV 225

Query: 248 ELTEDLVDACIPGD 261
            L  D+V+    GD
Sbjct: 226 ILRHDIVEQARAGD 239


>30076.m004661 DNA replication licensing factor MCM7, putative
          Length = 718

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 22/207 (10%)

Query: 143 LKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNI-----ARIFPDGKFSPP 197
           ++ ++A+YI +LV + G V + S V+PL+    + CE C   I     AR+F      P 
Sbjct: 143 IREVRASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGHEIYQEVTARVFMPLFECPT 202

Query: 198 TICNLNGCKSRTFHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVECELTEDLVDAC 257
             C  N         +R+S + + FQ+ +IQEL  +E   +G +PR++      +L    
Sbjct: 203 RRCKTNKANGNLILQLRAS-KFLKFQEAKIQEL--AEHVPKGHIPRSMSVHFRGELTRKV 259

Query: 258 IPGDVVTVTGIIRTINNYVDIGGGKLKGKNQGFYY-LYLEGVSIKNSKSQSTSFDFQDSK 316
           +PGDVV ++GI      ++ I     +    G     YLE +S+ + K +   ++ +  +
Sbjct: 260 VPGDVVEISGI------FLPIPYTGFRALRAGLVADTYLEAMSVTHFKKKYEEYELRGDE 313

Query: 317 SN--ARATELSDLF-----SFSPRGFG 336
               AR  E  D++     S +P  +G
Sbjct: 314 EEQIARLAEDGDIYNKLAQSLAPEIYG 340


>30131.m007101 DNA replication licensing factor MCM4, putative
          Length = 867

 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 4/140 (2%)

Query: 136 YPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFPD-GKF 194
           Y ++   ++NL  + I+K+VS++G +++ S++ P + +  F C  C      I  D G+ 
Sbjct: 210 YLKTSTTMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCGYLSDPIVVDRGRI 269

Query: 195 SPPTICNLNGCKSR-TFHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVECELTEDL 253
           + PT C+   C +R +   + +  +  D Q +R+QE    ++  EG  P TV   L + L
Sbjct: 270 NEPTNCSKEECLARNSMTLLHNRCRFADKQIVRLQET--PDEIPEGGTPHTVSLLLHDKL 327

Query: 254 VDACIPGDVVTVTGIIRTIN 273
           VD   PGD V VTGI R ++
Sbjct: 328 VDTGKPGDRVEVTGIYRAMS 347


>29693.m002033 DNA replication licensing factor MCM3, putative
          Length = 769

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 34/211 (16%)

Query: 144 KNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFPDGKFSPPTICNLN 203
           + L + +I  ++ V G V K S VRP VV+    C        R + D       I +  
Sbjct: 104 RELLSEFIGSMICVEGIVTKCSLVRPKVVKSVHFCPSTGDFTTREYRD-------ITSNV 156

Query: 204 GCKSRTFHPIRSSAQAV-----------DFQKIRIQELLRSEDHEEGRVPRTVECELTED 252
           G  + + +P R +   +           D Q + +QE+   E+   G++PRTV+  + +D
Sbjct: 157 GLPTGSVYPTRDNLGNLLVTEYGMCTYKDHQTLSMQEV--PENSAPGQLPRTVDIIVEDD 214

Query: 253 LVDACIPGDVVTVTGIIRTINNYVDIGGGKLKGKNQGFY--YLYLEGVSIKNSKSQSTSF 310
           LVD+C PGD V + GI + +        G+ KG   G +   +    VS+ N ++ +  +
Sbjct: 215 LVDSCKPGDRVAIVGIYKALP-------GRSKGSVNGVFRTVVIANNVSLLNKEANAPIY 267

Query: 311 DFQDSKSNARATELSDLF-----SFSPRGFG 336
             +D K+  +  E  D F     S +P  +G
Sbjct: 268 SPEDLKNIKKIAERDDAFDLLGNSLAPSIYG 298


>30128.m008586 DNA replication licensing factor MCM2, putative
          Length = 930

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 12/197 (6%)

Query: 75  LPIDFEQFRKICDVEEFYVILEEKPKVALSCLGAAVHKVLSTKCEENILQVGAKINIRLH 134
           L ID++QF  I       + L + P+  L  +      V+ +    N   +  KI +R+ 
Sbjct: 250 LEIDYKQF--IFVHPNIAIWLADAPQSVLEVMEDVAASVVFS-LHPNYKNIHQKIYVRIT 306

Query: 135 NYPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFPDGKF 194
           + P     ++N++  +++ ++ + G V + S V P + Q+ +DC KC + +   F    +
Sbjct: 307 SLP-VYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFF-QSSY 364

Query: 195 SPPTICNLNGCKSRTFHPIRSSAQAV---DFQKIRIQELLRSEDHEEGRVPRTVECELTE 251
           S   + +   C+S+   P   + +     ++QK+ +QE         GR+PR  E  L  
Sbjct: 365 SEVKVGSCPECQSKG--PFTVNIEQTIYRNYQKLTLQE--SPGIVPAGRLPRYKEVILLN 420

Query: 252 DLVDACIPGDVVTVTGI 268
           DL+D   PG+ + VTGI
Sbjct: 421 DLIDCARPGEEIEVTGI 437


>29806.m000936 Minichromosome maintenance protein MCM, putative
          Length = 644

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 10/140 (7%)

Query: 137 PESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFPD----G 192
           PE+  ++  ++  +   L++++GTV++   ++    +  + C KCK     ++P+     
Sbjct: 114 PETFPSIGRVRVKHRGILLTLKGTVIRSGAIKMYEGERMYRCRKCKQEFP-VYPELESRN 172

Query: 193 KFSPPTIC---NLNGCKSRTFHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVECEL 249
             + P+ C       C+   F  +  +    D+Q+I+IQE   ++    G +PR++   L
Sbjct: 173 SITLPSFCPSLRSKPCEGARFDCVDDTVIRHDYQEIKIQE--STQVLGVGVIPRSIPVIL 230

Query: 250 TEDLVDACIPGDVVTVTGII 269
           T+DLVD    GD V VTGI+
Sbjct: 231 TDDLVDIVKAGDDVIVTGIL 250