Jatropha Genome Database

JcCA0066621.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066621.20 - phase: 2 /partial
         (319 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005276 replication factor A 1, rfa1, putative                  590   e-169
29827.m002600 replication factor A 1, rfa1, putative                  425   e-119
30138.m003969 replication factor A 1, rfa1, putative                  187   4e-48

>29912.m005276 replication factor A 1, rfa1, putative
          Length = 670

 Score =  590 bits (1520), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 278/319 (87%), Positives = 300/319 (94%)

Query: 1   NAENNSIFDVIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLGGDFCNKEGQ 60
           N ENNSI DVIGIV SVNPSVPILRKNGMETQRRILNLKDGSGR++ELTL GDFCNKEGQ
Sbjct: 352 NVENNSILDVIGIVISVNPSVPILRKNGMETQRRILNLKDGSGRNIELTLWGDFCNKEGQ 411

Query: 61  KLQEIVDSGVFPVLAVKAGKVSDFSGKSLGTISSTQLFINPDIPEAYSVKDWFDRGGQNA 120
           +LQEIVDSG FPVLAVKAGKVSDFSGKSLGTISSTQLFINPDIPEA+ +KDWFDRGGQ+ 
Sbjct: 412 QLQEIVDSGDFPVLAVKAGKVSDFSGKSLGTISSTQLFINPDIPEAHGLKDWFDRGGQHT 471

Query: 121 TSVSISRDIMPGAPKNEIRKTVSQIKDEGLGRSDKPDWVTVSARITFVKTDTFCYTACPL 180
            SVSISRDI+PG  KNEIRKTVSQIK EGLGRSD+PDWVTVSARITFVKTDTFCYTACPL
Sbjct: 472 ASVSISRDILPGGSKNEIRKTVSQIKHEGLGRSDRPDWVTVSARITFVKTDTFCYTACPL 531

Query: 181 MIGDRQCNKKVTRSGNSRWQCDRCNQEFDECDYRYLLQAQIQDHTGITWVTAFQESGEQI 240
           MIGDRQCNKKVT SGNSRWQCDRCNQEFDECDYRYLLQ QIQDHTG+TWVTAFQESGE+I
Sbjct: 532 MIGDRQCNKKVTSSGNSRWQCDRCNQEFDECDYRYLLQVQIQDHTGLTWVTAFQESGEEI 591

Query: 241 LGYPAKEMYLLKNELQDETRFADILRSILFEQYLFRLKIKEEMYGDEQRVKITVVKADKV 300
           LG PAKE+Y LK E+QD+T+F+D++RS LF+Q+LFRLKIKEEMYGDEQRVKITVVKA+KV
Sbjct: 592 LGLPAKELYQLKYEMQDDTKFSDVIRSRLFQQFLFRLKIKEEMYGDEQRVKITVVKAEKV 651

Query: 301 DYSSESRYLLDLISKHPRY 319
           +YSSE RYLLDLIS+ PRY
Sbjct: 652 NYSSEGRYLLDLISQCPRY 670


>29827.m002600 replication factor A 1, rfa1, putative
          Length = 901

 Score =  425 bits (1093), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 188/314 (59%), Positives = 259/314 (82%), Gaps = 1/314 (0%)

Query: 3   ENNSIFDVIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLGGDFCNKEGQKL 62
           +NNS+ D+IG+V+ + P   I+RKNG ETQ+R L LKD SGRSVELTL G+FCN EGQ+L
Sbjct: 413 DNNSVVDIIGMVSCITPVASIMRKNGTETQKRTLQLKDNSGRSVELTLWGNFCNAEGQRL 472

Query: 63  QEIVDSGVFPVLAVKAGKVSDFSGKSLGTISSTQLFINPDIPEAYSVKDWFDRGGQNATS 122
           Q + DSG FPVLAVK+G+VSDF+GK++GTIS++QLFI PDIPEA  +K+WF++ G+N  S
Sbjct: 473 QNMCDSGGFPVLAVKSGRVSDFNGKAVGTISTSQLFIEPDIPEARRLKEWFEKEGRNTPS 532

Query: 123 VSISRDIMPGAPKNEIRKTVSQIKDEGLGRSDKPDWVTVSARITFVKTDTFCYTACPLMI 182
           VSISR++     ++EI KT+SQIKDE LG S+KPDW+T++A + ++K D FCYTACP+M 
Sbjct: 533 VSISRELS-SVGRSEIHKTISQIKDEKLGTSEKPDWITINATVIYIKADNFCYTACPIMA 591

Query: 183 GDRQCNKKVTRSGNSRWQCDRCNQEFDECDYRYLLQAQIQDHTGITWVTAFQESGEQILG 242
           GDR C+KKVT +G+ +W+C++C+Q  DECDYRY+LQ Q+QDHTGITWVTAFQESGE+I+G
Sbjct: 592 GDRPCSKKVTNNGDGKWRCEKCDQSMDECDYRYILQLQLQDHTGITWVTAFQESGEEIMG 651

Query: 243 YPAKEMYLLKNELQDETRFADILRSILFEQYLFRLKIKEEMYGDEQRVKITVVKADKVDY 302
             AK+++ +K E QD+  F+ ILR +LF +++ +LK+KEE + DEQRVK TVV+A+KV++
Sbjct: 652 ISAKDLHFMKYENQDDESFSKILRQVLFSKFVIKLKVKEETFSDEQRVKSTVVRAEKVNH 711

Query: 303 SSESRYLLDLISKH 316
           SS+SR+LL+++ K+
Sbjct: 712 SSQSRFLLEIMEKY 725


>30138.m003969 replication factor A 1, rfa1, putative
          Length = 622

 Score =  187 bits (476), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 179/318 (56%), Gaps = 16/318 (5%)

Query: 5   NSIFDVIGIVTSVNPSVPILRKNGME-TQRRILNLKDGSGRSVELTLGGDFCNKEGQKLQ 63
           N + DVIG+V SV+P++ I RK+  +   +R + + D + ++V ++L  D     GQ+L 
Sbjct: 309 NELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADETKKTVVVSLWNDLATDVGQELL 368

Query: 64  EIVDSGVFPVLAVKAGKVSDFSGKSLGTISSTQLFINPDIPEAYSVKDWFDRGGQNATSV 123
           ++ D    PV+A+KA KV DF G SL T+  + + +NPD PE+  +K WFD  G+  +  
Sbjct: 369 DMADKS--PVVAIKALKVGDFQGVSLSTLGRSIIQVNPDTPESKKLKSWFDSEGKETSLA 426

Query: 124 SISRDIMP-----GAPKNEIRKTVSQIKDEGLGRSDKPDWVTVSARITFVKTD-TFCYTA 177
           S+   + P     G      R ++S I       SDKP + ++ A I+F+K D +  Y A
Sbjct: 427 SVGAGLSPSTKSGGGSMYSDRVSISHITSNPSLGSDKPAFFSIRAYISFIKPDQSMWYRA 486

Query: 178 CPLMIGDRQCNKKVTRSGNSRWQCDRCNQEFDECDYRYLLQAQIQDHTGITWVTAFQESG 237
           C      + CNKKVT +    + C+ C +   EC  RY++  ++ D +G  WV+AF   G
Sbjct: 487 C------KTCNKKVTEAIGGGYWCEGCQKNDAECSLRYIMVVKVSDASGEGWVSAFNNEG 540

Query: 238 EQILGYPAKEMYLLKNELQDETRFADILRSILFEQYLFRLKIKEEMYGDEQRVKITVVKA 297
           E+I+G  A E+  LK++ +D   +   L+   +  +LFR+ + +  Y +E+R +ITV   
Sbjct: 541 ERIIGCSADELDKLKSQ-EDGNSYELKLKEATWSPHLFRVSVAQNEYNNEKRQRITVRAV 599

Query: 298 DKVDYSSESRYLLDLISK 315
             +D+++ESR+LL+ ISK
Sbjct: 600 APLDFAAESRFLLEEISK 617