Jatropha Genome Database

JcCA0066621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066621.10 + phase: 2 /partial
         (58 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005277 conserved hypothetical protein                           99   6e-22
29739.m003603 conserved hypothetical protein                           92   6e-20

>29912.m005277 conserved hypothetical protein
          Length = 121

 Score = 98.6 bits (244), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 57/60 (95%), Gaps = 2/60 (3%)

Query: 1   LTAAALTASMVMPDVAEAAE--LSPSLKNFLLSIVAGGVVLTAIVGAVIGVANFDPVKRS 58
           LTAAALTASMV+P+VAEAA   +SPSLKNFLLSIVAGGVVLTAIVGA+IGVANFDPVKRS
Sbjct: 62  LTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDPVKRS 121


>29739.m003603 conserved hypothetical protein
          Length = 115

 Score = 91.7 bits (226), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/58 (86%), Positives = 52/58 (89%), Gaps = 1/58 (1%)

Query: 1   LTAAALTASMVMPDVAEAAELSPSLKNFLLSIVAGGVVLTAIVGAVIGVANFDPVKRS 58
           LT AALTASMVMPDVAEAA   PSLKNFLLSIVAGGVVL AIVGA++ VANFDPVKRS
Sbjct: 59  LTIAALTASMVMPDVAEAAVF-PSLKNFLLSIVAGGVVLGAIVGAIVAVANFDPVKRS 115