Jatropha Genome Database

JcCA0066101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066101.10 + phase: 1 /partial
         (67 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30142.m000632 Rho GTPase activator, putative                          106   2e-24
29908.m006240 conserved hypothetical protein                           83   2e-17

>30142.m000632 Rho GTPase activator, putative
          Length = 821

 Score =  106 bits (265), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/67 (76%), Positives = 53/67 (79%)

Query: 1   TKVEGILRQSADXXXXXXXXXXXXXGKSEFEPDEDAHVVGDCVKHVLRELPSSPVPASCC 60
           TKVEGILRQSAD             GK++FEPDEDAHVV DCVKHVLRELPSSPVPASCC
Sbjct: 141 TKVEGILRQSADVEEVERRVQEYEQGKTDFEPDEDAHVVADCVKHVLRELPSSPVPASCC 200

Query: 61  TALLEAY 67
           TALLEAY
Sbjct: 201 TALLEAY 207


>29908.m006240 conserved hypothetical protein
          Length = 980

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 46/66 (69%)

Query: 2   KVEGILRQSADXXXXXXXXXXXXXGKSEFEPDEDAHVVGDCVKHVLRELPSSPVPASCCT 61
           KVEGILRQ+A              G++EF   EDAHV+ DCVK+ LRELPSSPVPASCC 
Sbjct: 230 KVEGILRQAAAVDDVEHRIREYEQGRTEFSAGEDAHVIADCVKYFLRELPSSPVPASCCK 289

Query: 62  ALLEAY 67
           ALLEA+
Sbjct: 290 ALLEAF 295