Jatropha Genome Database

JcCA0065831.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0065831.30 - phase: 1 /partial/short
         (32 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m010986 glyceraldehyde 3-phosphate dehydrogenase, putative       65   8e-12
30147.m013783 glyceraldehyde 3-phosphate dehydrogenase, putative       62   4e-11
30169.m006270 glyceraldehyde 3-phosphate dehydrogenase, putative       48   1e-06

>30190.m010986 glyceraldehyde 3-phosphate dehydrogenase, putative
          Length = 295

 Score = 64.7 bits (156), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 28/32 (87%), Positives = 32/32 (100%)

Query: 1  PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
          PEEIPWGQ+GA++VVESTGVFTDK+KAAAHLK
Sbjct: 42 PEEIPWGQSGADYVVESTGVFTDKDKAAAHLK 73


>30147.m013783 glyceraldehyde 3-phosphate dehydrogenase, putative
          Length = 337

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 31/32 (96%)

Query: 1   PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
           PEEIPW +TGAE++VESTGVFTDK+KAAAHLK
Sbjct: 84  PEEIPWAETGAEYIVESTGVFTDKDKAAAHLK 115


>30169.m006270 glyceraldehyde 3-phosphate dehydrogenase, putative
          Length = 426

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/32 (65%), Positives = 26/32 (81%)

Query: 1   PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
           P EIPWG  GAE+VVE++GVFT  +KA+AH K
Sbjct: 170 PAEIPWGDHGAEYVVEASGVFTTIDKASAHKK 201