Jatropha Genome Database

JcCA0062081.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0062081.20 + phase: 0 
         (78 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29804.m001536 mads box protein, putative                              119   4e-28
29596.m000699 mads box protein, putative                              115   6e-27
30221.m002218 mads box protein, putative                               97   2e-21
30147.m014133 mads box protein, putative                               95   9e-21
29648.m001978 mads box protein, putative                               93   2e-20
29907.m000663 mads box protein, putative                               92   4e-20
30174.m008934 mads box protein, putative                               92   7e-20
29838.m001690 mads box protein, putative                               89   3e-19
30138.m003939 mads box protein, putative                               89   4e-19
29908.m005982 mads box protein, putative                               82   5e-17
30170.m013776 mads box protein, putative                               80   2e-16
29782.m000119 Floral homeotic protein DEFICIENS, putative              79   5e-16
30138.m004061 mads box protein, putative                               73   2e-14
29693.m002042 mads box protein, putative                               71   1e-13
29693.m002039 mads box protein, putative                               70   2e-13
29813.m001508 mads box protein, putative                               67   2e-12
30099.m001672 mads box protein, putative                               66   3e-12
29613.m000367 mads box protein, putative                               65   6e-12
28348.m000077 mads box protein, putative                               65   8e-12
30099.m001671 mads box protein, putative                               65   9e-12
27866.m000233 mads box protein, putative                               64   2e-11
29739.m003627 mads box protein, putative                               62   7e-11
29693.m002041 mads box protein, putative                               61   1e-10
28830.m000229 mads box protein, putative                               60   2e-10
29912.m005524 mads box protein, putative                               57   1e-09
29838.m001672 mads box protein, putative                               57   2e-09
27893.m000228 mads box protein, putative                               49   6e-07
29653.m000299 mads box protein, putative                               49   6e-07
30190.m010925 conserved hypothetical protein                           47   1e-06

>29804.m001536 mads box protein, putative
          Length = 266

 Score =  119 bits (297), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/60 (96%), Positives = 59/60 (98%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAST 60
          MGRGKIVIRRIDNSTSRQVTFSKRR+GLLKKARELSILCDAEVGVIIFSST KLYDYAST
Sbjct: 28 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGVIIFSSTSKLYDYAST 87


>29596.m000699 mads box protein, putative
          Length = 262

 Score =  115 bits (287), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 53/60 (88%), Positives = 60/60 (100%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAST 60
          MGRGKIVIRRIDNSTSRQVTFSKRR+GLLKKA+EL+ILCDAEVGV+IFSSTGKLYD++S+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFSSS 60


>30221.m002218 mads box protein, putative
          Length = 233

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 52/59 (88%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAS 59
          MGRGKI I+RI+N T+RQVTFSKRR+GLLKK  ELS+LCDA++G+IIFSSTGK+  Y +
Sbjct: 1  MGRGKIPIKRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCT 59


>30147.m014133 mads box protein, putative
          Length = 213

 Score = 94.7 bits (234), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 44/60 (73%), Positives = 52/60 (86%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAST 60
          M RGKI +RRI+N+TSRQVTFSKRR+GLLKKA ELS+LCDAEV VIIFS  G+L ++AS 
Sbjct: 1  MVRGKIQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLSEFASN 60


>29648.m001978 mads box protein, putative
          Length = 234

 Score = 93.2 bits (230), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 60/75 (80%), Gaps = 1/75 (1%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAST 60
          MGRG+I I+RI+NS++RQVT+SKRR+G++KKA+E+++LCDAEV +IIF+S+GK+++Y S 
Sbjct: 1  MGRGRIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAEVSLIIFASSGKMHEYCSP 60

Query: 61 RSDFYLAFSSYIHKF 75
           +        Y HK 
Sbjct: 61 STTLVDMLDKY-HKL 74


>29907.m000663 mads box protein, putative
          Length = 205

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 56/76 (73%), Gaps = 5/76 (6%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAST 60
          M RGK+ ++RI+N   RQVTF KRRSGLLKKA+ELS+LCDAE+G+ IFS+ GKLYD A+ 
Sbjct: 1  MARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYDLATK 60

Query: 61 RSDFYLAFSSYIHKFM 76
           +      S  I ++M
Sbjct: 61 GT-----MSGLIERYM 71


>30174.m008934 mads box protein, putative
          Length = 244

 Score = 91.7 bits (226), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/59 (67%), Positives = 52/59 (88%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAS 59
          MGRG++ ++RI+N  +RQVTFSKRR+GLLKKA ELS+LCDAEV +IIFSS GKLY++ +
Sbjct: 1  MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGN 59


>29838.m001690 mads box protein, putative
          Length = 61

 Score = 89.4 bits (220), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 52/61 (85%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAST 60
          M R KI I++IDN T+RQVTFSKRR GL KKA ELS LCDAE+ +++FS+TGKL++YAS+
Sbjct: 1  MTRQKIQIKKIDNITARQVTFSKRRRGLFKKAYELSTLCDAEIALLVFSATGKLFEYASS 60

Query: 61 R 61
          R
Sbjct: 61 R 61


>30138.m003939 mads box protein, putative
          Length = 244

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 53/59 (89%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAS 59
          MGRG++ ++RI+N  +RQVTFSKRR+GLLKKA E+S+LCDAEV +I+FS+ GKL++Y++
Sbjct: 1  MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59


>29908.m005982 mads box protein, putative
          Length = 347

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 56/73 (76%), Gaps = 1/73 (1%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAST 60
          MGR K+ I+RI+N+T+RQVTFSKRR+GL+KKA ELSILCD ++ +I+FS +G+L  + S 
Sbjct: 1  MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHF-SG 59

Query: 61 RSDFYLAFSSYIH 73
          R      F+ Y++
Sbjct: 60 RKRIEDVFARYVN 72


>30170.m013776 mads box protein, putative
          Length = 230

 Score = 79.7 bits (195), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 52/62 (83%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAST 60
          MGR K+ I+RI+N+T+RQVTFSKRR+GL+KKA ELS+LCD +V +I+FS +G+L  ++  
Sbjct: 1  MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFSGI 60

Query: 61 RS 62
          +S
Sbjct: 61 KS 62


>29782.m000119 Floral homeotic protein DEFICIENS, putative
          Length = 235

 Score = 79.0 bits (193), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 56/72 (77%), Gaps = 1/72 (1%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTG-KLYDYAS 59
          MGRGKI I++I+N T+RQVT+SKRR+G+ KKA+EL++LCDA+V +I+FS++G K +++ S
Sbjct: 1  MGRGKIEIKKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNSGRKFHEFIS 60

Query: 60 TRSDFYLAFSSY 71
            +     F  Y
Sbjct: 61 PGTTTKKIFDQY 72


>30138.m004061 mads box protein, putative
          Length = 363

 Score = 73.2 bits (178), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 47/53 (88%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGK 53
          MGR K+ I+R++++++RQVT+SKRR+G+LKKA+ELSILCD  + +++FS TGK
Sbjct: 1  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKAKELSILCDIHIVLLMFSPTGK 53


>29693.m002042 mads box protein, putative
          Length = 220

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 2  GRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYA 58
          GR KI ++RI+N   R +TFSKRRSG+ KKA EL  LC AEVG+++FS  GK + + 
Sbjct: 9  GRQKITMKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGKPFSFG 65


>29693.m002039 mads box protein, putative
          Length = 172

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 44/57 (77%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDY 57
          MGR KI ++ + +++SRQVTFSKRR+GL KKA EL+ LC A++ +++FS  GK + +
Sbjct: 1  MGRRKIEMKMVKDTSSRQVTFSKRRTGLFKKANELATLCAAQIAIVVFSPGGKPFSF 57


>29813.m001508 mads box protein, putative
          Length = 360

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 43/53 (81%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGK 53
          MGR K+ I++++N+  RQ T+ KR+ G++KKA+ELSILCD ++ +++FS TGK
Sbjct: 1  MGRVKLKIKKLENTNGRQATYGKRKHGIIKKAKELSILCDIDIILLMFSPTGK 53


>30099.m001672 mads box protein, putative
          Length = 217

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 41/57 (71%)

Query: 2  GRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYA 58
          GR KI + ++ N ++ QVTFSKRRSGL KKA ELS LC AE+ +I+FS   K++ + 
Sbjct: 7  GRQKIDMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSFG 63


>29613.m000367 mads box protein, putative
          Length = 183

 Score = 65.1 bits (157), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYA 58
          +GR KI I +I   +  QVTFSKRR+GL KKA EL  LC  E+ +I+FS  GK + + 
Sbjct: 6  LGRQKIAIEKISKKSHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPAGKAFSFG 63


>28348.m000077 mads box protein, putative
          Length = 215

 Score = 64.7 bits (156), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query: 2  GRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYASTR 61
          GR KI I++++N   R VTFSKR+ G+ KKA ELS LC AE+ V++FS  GK++   +  
Sbjct: 17 GRQKIEIKKLENVNRRYVTFSKRKHGIFKKATELSTLCGAEIAVVLFSGHGKVFSCGNPD 76

Query: 62 SD 63
           D
Sbjct: 77 VD 78


>30099.m001671 mads box protein, putative
          Length = 226

 Score = 64.7 bits (156), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAST 60
          +GR KI I +I   T  QVTFSKRR+GL KKA EL  LC  E+ +++FS   K + +   
Sbjct: 26 LGRQKIAIEKISKKTHLQVTFSKRRAGLFKKASELCTLCGVEIAILVFSPANKAFSFGHP 85

Query: 61 RSDFYL 66
            +  L
Sbjct: 86 EVESVL 91


>27866.m000233 mads box protein, putative
          Length = 217

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 43/65 (66%)

Query: 2  GRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYASTR 61
          GR KI I+ I+  ++ QVTFSKRR+GL KKA ELS+LC A+V V+ FS   K++ +    
Sbjct: 13 GRQKIEIKPIEGKSNLQVTFSKRRAGLFKKASELSLLCGAQVAVLAFSPGKKVFAFGHPN 72

Query: 62 SDFYL 66
           +  L
Sbjct: 73 VETVL 77


>29739.m003627 mads box protein, putative
          Length = 62

 Score = 61.6 bits (148), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 42/53 (79%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGK 53
          MGR K+ I R+++  +RQV +SKR+ G+LKK +EL+ LCD ++G+I+FS +GK
Sbjct: 1  MGRRKLKILRLESVKARQVKYSKRKLGVLKKGKELATLCDVDLGLIMFSPSGK 53


>29693.m002041 mads box protein, putative
          Length = 239

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query: 2  GRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYASTR 61
          GR KI +++I+N   R +TFSKRRSG+ KKA EL  L  AE+  +++S  GK + +A   
Sbjct: 12 GRQKIEMKKIENEDDRLITFSKRRSGIYKKASELVTLTGAELAFLVYSPAGKPFSFAHPS 71

Query: 62 SD 63
           D
Sbjct: 72 MD 73


>28830.m000229 mads box protein, putative
          Length = 197

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 37/57 (64%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDY 57
          MGR K  +  I   ++RQV+FSKRR+G+ KKA EL  LC  E  V+IFS  GK + +
Sbjct: 1  MGRKKTQMSLIQGESARQVSFSKRRTGIFKKASELCTLCAVEAAVVIFSPGGKAFTF 57


>29912.m005524 mads box protein, putative
          Length = 338

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 33/49 (67%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFS 49
          MGRGK+ +  I N  SR +T+ KR+ GL KK +E  ILCD +  +IIFS
Sbjct: 1  MGRGKLNMELISNEKSRMITYHKRKKGLTKKVQEFHILCDVDACIIIFS 49


>29838.m001672 mads box protein, putative
          Length = 207

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%)

Query: 2  GRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAST 60
          GR +I + +I   ++R VTFSKRR G+ KKA ELS LC AE+ +I+FS   + + + + 
Sbjct: 8  GRQRIEMVKISKESNRLVTFSKRRYGVFKKASELSTLCGAEISIIVFSPGKRAFSFGNP 66


>27893.m000228 mads box protein, putative
          Length = 349

 Score = 48.5 bits (114), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 8  IRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTG----KLYDYASTRSD 63
          ++++++   R V+F+KRR+GL  KA EL +LCDA++ V++ S       K+Y +    +D
Sbjct: 9  MKKLESQKQRSVSFTKRRNGLFNKAAELFMLCDAQLAVLVASPCSKPKRKVYSFGHPSAD 68

Query: 64 FYL 66
            L
Sbjct: 69 VVL 71


>29653.m000299 mads box protein, putative
          Length = 166

 Score = 48.5 bits (114), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)

Query: 5  KIVIRRI-DNSTSRQVTFSKRRSGLLKKARELSIL--CDAEVGVIIFSSTGKLYDYASTR 61
          KI I++I DN T   VTFSKRR+GL KKA E   L    AEV +I FS +G+ + +    
Sbjct: 29 KIEIKKIQDNKTGLIVTFSKRRTGLFKKAMEFCNLDGGGAEVALITFSPSGRPFSFGKPS 88

Query: 62 SD 63
           D
Sbjct: 89 PD 90


>30190.m010925 conserved hypothetical protein
          Length = 386

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGK 53
          MG  +I +  I+  ++R +T+ KR+  L+KK  E SILC  E  +IIF+   K
Sbjct: 1  MGHSRIKMELIEKESTRMLTYQKRKKSLVKKVSEFSILCGVEACLIIFAPKHK 53