Jatropha Genome Database

JcCA0062081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0062081.10 + phase: 0 
         (89 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005494 conserved hypothetical protein                           53   3e-08

>29912.m005494 conserved hypothetical protein
          Length = 346

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 1  MGSRDKDQMTSHHQXXXXXXXXXXX-XIXXXXXXXXXXXXXXXYEPGEVHRDPPPYSCQD 59
          MGSRDKDQ TSHHQ                             YEPGEV R+PPPYS  D
Sbjct: 1  MGSRDKDQTTSHHQPLLSSLVVRPSVSDGGDGGAGGRGGGGSDYEPGEVRREPPPYSRSD 60

Query: 60 RYSDDPRWR 68
          RYSDDP +R
Sbjct: 61 RYSDDPGYR 69