Jatropha Genome Database

JcCA0060881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0060881.10 + phase: 0 /partial
         (93 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006006 Endoplasmic reticulum-Golgi intermediate compartme...   169   2e-43
28515.m000316 Endoplasmic reticulum-Golgi intermediate compartme...    64   2e-11
28166.m001091 thioredoxin domain-containingprotein, putative           49   3e-07

>29908.m006006 Endoplasmic reticulum-Golgi intermediate compartment
           protein, putative
          Length = 386

 Score =  169 bits (429), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/86 (94%), Positives = 83/86 (96%)

Query: 8   LALSNLRLYLHAVTETKLVVDTSRGETLRINFDVTFPALPCSILSLDAMDISGEQHLDVK 67
           L +S LRLY+HAVTETKL VDTSRGETLRINFDVTFPALPCSILSLDAMDISGEQHLDVK
Sbjct: 42  LFISELRLYIHAVTETKLAVDTSRGETLRINFDVTFPALPCSILSLDAMDISGEQHLDVK 101

Query: 68  HDIIKKRLDSHGNVIEARQDGIGAPK 93
           HDIIKKRLDSHGNVIEARQDGIGAPK
Sbjct: 102 HDIIKKRLDSHGNVIEARQDGIGAPK 127


>28515.m000316 Endoplasmic reticulum-Golgi intermediate
          compartment protein, putative
          Length = 265

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 34/38 (89%)

Query: 56 MDISGEQHLDVKHDIIKKRLDSHGNVIEARQDGIGAPK 93
          MDI GEQH D+KH+I KKR+++HG+VIE R++GIGAPK
Sbjct: 1  MDIMGEQHFDIKHNITKKRINAHGDVIEVRKEGIGAPK 38


>28166.m001091 thioredoxin domain-containingprotein, putative
          Length = 478

 Score = 49.3 bits (116), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)

Query: 8   LALSNLRLYLHAVTETKLVVD-TSRGETLRINFDVTFPALPCSILSLDAMDISGEQHLDV 66
           + LSN   YL   T T ++VD +S G+ LRI+F+++FPAL C   S+D  D+ G   L++
Sbjct: 44  MELSN---YLTVNTSTSVIVDKSSDGDFLRIDFNLSFPALSCEFASVDVSDVLGTNRLNI 100

Query: 67  KHDIIKKRLD 76
              I K  +D
Sbjct: 101 TKTIRKFSID 110