Jatropha Genome Database

JcCA0060621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0060621.10 + phase: 2 /partial
         (161 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30008.m000797 3-isopropylmalate dehydratase, putative                 271   7e-74
30008.m000798 3-isopropylmalate dehydratase, putative                 266   3e-72

>30008.m000797 3-isopropylmalate dehydratase, putative
          Length = 510

 Score =  271 bits (694), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 129/132 (97%), Positives = 131/132 (99%)

Query: 1   FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFL 60
           FLSEYRFD+SKLEPLVAKPHSPDN ALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFL
Sbjct: 334 FLSEYRFDVSKLEPLVAKPHSPDNCALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFL 393

Query: 61  ASGKKVKVPTFLVPATQKVWMDVYSLPVPGSGGRTCSQIFEEAGCDTPASPSCGACLGGP 120
           ASGKKVKVPTFLVPATQKVWMDVYSLPVPGSGG+TCSQIFEEAGCDTPASPSCGACLGGP
Sbjct: 394 ASGKKVKVPTFLVPATQKVWMDVYSLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGP 453

Query: 121 KDTYARMNEPMV 132
           KDTYARMNEPMV
Sbjct: 454 KDTYARMNEPMV 465


>30008.m000798 3-isopropylmalate dehydratase, putative
          Length = 621

 Score =  266 bits (681), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 124/132 (93%), Positives = 129/132 (97%)

Query: 1   FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFL 60
           FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDF AAAKVFL
Sbjct: 445 FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFTAAAKVFL 504

Query: 61  ASGKKVKVPTFLVPATQKVWMDVYSLPVPGSGGRTCSQIFEEAGCDTPASPSCGACLGGP 120
           ASGKKVKVPTFLVPATQKVWMDVYS+PVPGSGG+TCS+IFEEAGCDTPASP C AC+GGP
Sbjct: 505 ASGKKVKVPTFLVPATQKVWMDVYSIPVPGSGGKTCSRIFEEAGCDTPASPGCSACMGGP 564

Query: 121 KDTYARMNEPMV 132
           +DTYARMNEPMV
Sbjct: 565 RDTYARMNEPMV 576