Jatropha Genome Database

JcCA0059791.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0059791.20 + phase: 0 
         (99 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30143.m001198 conserved hypothetical protein                          146   2e-36
29973.m000398 hypothetical protein                                    107   9e-25

>30143.m001198 conserved hypothetical protein
          Length = 209

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 67/95 (70%), Positives = 76/95 (80%)

Query: 1  MDWGTVTAEDLMGALREVDWSTPPRPLHEFFSRFTIPRSYPKWNSRFKCNLYYYRTNYFI 60
          MDWGTVTAEDL+GALREVDWSTPPRP++EFFS+FTIPRSYPKW+SRFKCNLYYYR+NYFI
Sbjct: 1  MDWGTVTAEDLIGALREVDWSTPPRPVNEFFSKFTIPRSYPKWDSRFKCNLYYYRSNYFI 60

Query: 61 VIVLALGVACXXXXXXXXXXXXXXXXXXFLNDRYA 95
          +I+LALGVAC                  FLND +A
Sbjct: 61 LIMLALGVACITRPMAIVATALTALSIAFLNDSFA 95


>29973.m000398 hypothetical protein
          Length = 376

 Score =  107 bits (268), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 1  MDWGTVTAEDLMGALREVDWSTPPRPLHEFFSRFTIPRSYPKWNSRFKCNLYYYRTNYFI 60
          MDWG VTAEDLM ALREVDWS+PPRPL EFFSRFT P+S  KWNSR       YRTNYFI
Sbjct: 1  MDWGNVTAEDLMDALREVDWSSPPRPLSEFFSRFTFPKSSSKWNSRLN-----YRTNYFI 55

Query: 61 VIVLALGVACXXXXXXXXXXXXXXXXXXFLNDRYAN 96
          +I+  LG+                    FLND +A 
Sbjct: 56 MIIFILGIGFLRRPLAIVAALLTALTIAFLNDSFAG 91