Jatropha Genome Database

JcCA0059711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0059711.10 - phase: 0 
         (66 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29801.m003204 conserved hypothetical protein                           57   2e-09
30115.m001181 conserved hypothetical protein                           48   1e-06

>29801.m003204 conserved hypothetical protein
          Length = 202

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 1   MDAPAAKGKSGRKC-FQSEKMPTQXXXXXXXXXXXXXXXXXXXXXYNYDVAKDVPLEGRY 59
           M++PA   K+ RK    +EK+P+Q                     YNYD+ KD+PLEGRY
Sbjct: 136 MESPAPVVKNCRKIRLPAEKVPSQVEIDEFFAEAEKKEQKRFADKYNYDIVKDLPLEGRY 195

Query: 60  QWVRLKP 66
           QWVRLKP
Sbjct: 196 QWVRLKP 202


>30115.m001181 conserved hypothetical protein
          Length = 219

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 5   AAKGKSGRK-CFQSEKMPTQXXXXXXXXXXXXXXXXXXXXXYNYDVAKDVPLEGRYQWVR 63
           A +  S RK     EKMPT+                     YNYDV KD PL+GRY+WVR
Sbjct: 157 AMEANSRRKPSLTVEKMPTETELDEFFAEAERNIQKRFADKYNYDVVKDEPLKGRYEWVR 216

Query: 64  LKP 66
           LKP
Sbjct: 217 LKP 219