Jatropha Genome Database

JcCA0046261.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046261.20 + phase: 0 /pseudo/partial
         (144 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29738.m001015 hypothetical protein                                     49   1e-06

>29738.m001015 hypothetical protein
          Length = 304

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 93  SADVSGFGVIVHDCKSLVTEITTVQVVFAHRSASGVVHSLARASH---SLADWME 144
           S+DVS FGV + DC S + +  + QV F  + A+ V H LARASH   S  DW E
Sbjct: 233 SSDVSEFGVFIKDCLSFLADNLSFQVWFVKQQANVVAHKLARASHLFGSGVDWEE 287