Jatropha Genome Database

JcCA0046101.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046101.30 + phase: 0 /partial
         (219 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27810.m000650 DNA-directed RNA polymerase I largest subunit, put...   396   e-111
29784.m000366 DNA-directed RNA polymerase II largest subunit, pu...    57   6e-09
30130.m000272 DNA-directed RNA polymerase III largest subunit, p...    56   2e-08

>27810.m000650 DNA-directed RNA polymerase I largest subunit,
           putative
          Length = 1686

 Score =  396 bits (1018), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 183/216 (84%), Positives = 198/216 (91%)

Query: 1   GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
           GATESIDSI+FSFLTDEEVRKHSFVKIT+PRLLDLV+RPV GGLYDPALGPLSE TICKT
Sbjct: 10  GATESIDSISFSFLTDEEVRKHSFVKITNPRLLDLVERPVPGGLYDPALGPLSERTICKT 69

Query: 61  CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
           CGQR TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCF CFHFR+ RGQV+KC+KQLEL
Sbjct: 70  CGQRSTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFLCFHFRMQRGQVEKCIKQLEL 129

Query: 121 IVKGDIVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSE 180
           IVKGDIVGAKRL+SV PSE LYPEESD SHESC T+HSG QC++GEH +Q+ WTSLQF+E
Sbjct: 130 IVKGDIVGAKRLESVSPSEALYPEESDLSHESCPTIHSGVQCNDGEHTRQQGWTSLQFTE 189

Query: 181 ATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGWFYT 216
           A SVLN FL PKFKKCKNC + NPNITKP FGWF+T
Sbjct: 190 AMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHT 225


>29784.m000366 DNA-directed RNA polymerase II largest subunit,
           putative
          Length = 1855

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 9   ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTNC 68
           + F  L+ +E+R+ S V+I      +   +P  GGL D  LG +     C+TC   +  C
Sbjct: 18  VQFGILSPDEIRQMSVVQIEFSETTER-GKPKPGGLSDLRLGTIDRKMKCETCTANMAEC 76

Query: 69  PGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
           PGH GH++L  P+++      +  +++  CF C
Sbjct: 77  PGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNC 109


>30130.m000272 DNA-directed RNA polymerase III largest subunit,
           putative
          Length = 1383

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 34  DLVDRPVLGGLYDPALGPLS-EGTICKTCGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHK 92
           D   +P+  GL DP LGP + + + C+TCG     CPGH G+++LV PV+N    + +  
Sbjct: 22  DSTRKPIQAGLLDPRLGPATKQSSACETCGADFHECPGHFGYLNLVLPVFNVGYMSNILD 81

Query: 93  LLQRTCFYC 101
           +L+  C  C
Sbjct: 82  ILKCICKSC 90