Jatropha Genome Database

JcCA0046021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046021.20 + phase: 0 
         (255 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002076 conserved hypothetical protein                          333   5e-92
29917.m002012 conserved hypothetical protein                          117   4e-27
29739.m003633 conserved hypothetical protein                          108   2e-24

>29647.m002076 conserved hypothetical protein
          Length = 293

 Score =  333 bits (854), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 184/292 (63%), Positives = 199/292 (68%), Gaps = 38/292 (13%)

Query: 1   MVSLRFPFLFSQPIR-PSVISYATTSRSXXXXXXXXXXXXXXXXXXXXXXXIQNPTNTRD 59
           MVSLRFPFLFSQP + P+  +    S +                         N  N   
Sbjct: 1   MVSLRFPFLFSQPRKQPNHATSGHFSATRTVVACAVAAGAATFAGIAATHNSYNFNNKER 60

Query: 60  SFLQTALNFLLPNHSSLPWGSLSLADASPA--LVESKTGV-------------------- 97
            F Q  LN L  N +SLPWGSLSLADASP   +VESKTGV                    
Sbjct: 61  PFTQNVLNLLFANINSLPWGSLSLADASPTTTVVESKTGVSFPSVVYETRRLLGVGLRRK 120

Query: 98  ---------------YADDDQVKNVLGEKYGKLSISELKENKEFKEDLMELDIFITVRLQ 142
                          YADDDQVK VLGEKYGK+SISELK+NK FK+D ME DI  TVRLQ
Sbjct: 121 SVLGLKNINVYAFGVYADDDQVKKVLGEKYGKISISELKQNKGFKDDYMEGDICTTVRLQ 180

Query: 143 IVYSRLSIRSVRSAFEESVGSRLQKFGGPDNKELLQRFTSQFKDEYKIPRGSVIELSREK 202
           IVYS+LSIRSVRSAFEESVGSRLQKFGGPDNKELLQRFTSQFKDEYKIPRGSVIELSR+K
Sbjct: 181 IVYSKLSIRSVRSAFEESVGSRLQKFGGPDNKELLQRFTSQFKDEYKIPRGSVIELSRDK 240

Query: 203 GHVLRTTIDGKEAGSVQSKVLCRSILDLYIGEDPFDRQAKENIESKLASLLQ 254
           GHVLRTTIDGKE GS+QSK+LCRSILDLYIGEDPFDRQAKE+IESKL SL+Q
Sbjct: 241 GHVLRTTIDGKEVGSIQSKLLCRSILDLYIGEDPFDRQAKEDIESKLVSLIQ 292


>29917.m002012 conserved hypothetical protein
          Length = 268

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 98/159 (61%), Gaps = 4/159 (2%)

Query: 96  GVYADDDQVKNVLGEKYGKLSISELKENKEFKEDLMELDIFITVRLQIVYSRLSIRSVRS 155
           G+Y D+D +K++L  K GK   +  K  KE  + ++E D+ + +RL IV+S L++  V+ 
Sbjct: 113 GMYTDNDTLKDILKLKIGK---APAKPTKEMYQAVIESDVAMMMRLVIVFSSLTMNMVKK 169

Query: 156 AFEESVGSRLQKF-GGPDNKELLQRFTSQFKDEYKIPRGSVIELSREKGHVLRTTIDGKE 214
            F+E +G+ ++K  GG  N EL  +   Q  D+ K+  GSVIE+SR  GHVL T + G  
Sbjct: 170 NFDEGLGAAIRKLNGGKKNDELANKVMGQASDDIKLTSGSVIEISRLPGHVLETKVMGGV 229

Query: 215 AGSVQSKVLCRSILDLYIGEDPFDRQAKENIESKLASLL 253
              V+S++LCR+ + +Y+G+DPFD+ AKE     L SL 
Sbjct: 230 ISKVESELLCRAYVYMYLGDDPFDKDAKEKFGMSLLSLF 268


>29739.m003633 conserved hypothetical protein
          Length = 428

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 88/159 (55%)

Query: 96  GVYADDDQVKNVLGEKYGKLSISELKENKEFKEDLMELDIFITVRLQIVYSRLSIRSVRS 155
           G Y   + V   LG KY  +  +EL   ++F EDL+  DI +TVRL I  + + I +V+ 
Sbjct: 268 GFYVHPNSVCEKLGPKYASVPAAELNNCRDFYEDLLREDIGMTVRLVINCNGMKINTVKD 327

Query: 156 AFEESVGSRLQKFGGPDNKELLQRFTSQFKDEYKIPRGSVIELSREKGHVLRTTIDGKEA 215
           AFE+S+ +RL K     +   L+ F S F  +  +P G+ ++  R     L T I G + 
Sbjct: 328 AFEKSLRNRLLKTNPDTDYSCLRTFGSFFTKDIPLPAGTTVDFRRTADGQLITEIGGNQI 387

Query: 216 GSVQSKVLCRSILDLYIGEDPFDRQAKENIESKLASLLQ 254
           G+V SK LCR+  D+YIG+ P   Q KE I   +AS+++
Sbjct: 388 GAVHSKDLCRAFFDMYIGDIPVSEQTKEEIGKNVASMMR 426