Jatropha Genome Database

JcCA0045831.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045831.40 - phase: 0 
         (92 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014102 transcription regulator, putative                       144   7e-36
29736.m002007 transcription regulator, putative                       127   2e-30
29822.m003497 transcription regulator, putative                       122   5e-29
30147.m014106 DNA binding protein, putative                            75   9e-15

>30147.m014102 transcription regulator, putative
          Length = 91

 Score =  144 bits (364), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 17 ITDDQILDLVTKLQQLLPEIGNRRSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLA 76
          ITDDQILDLV+KLQQLLPEI NRRSDKVSAAKVLQETCNYIR+LHREVDDLSERLSELLA
Sbjct: 16 ITDDQILDLVSKLQQLLPEIRNRRSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLA 75

Query: 77 TTDTAQAAIIRNLLMQ 92
          TTDTAQAAIIRNLLMQ
Sbjct: 76 TTDTAQAAIIRNLLMQ 91


>29736.m002007 transcription regulator, putative
          Length = 93

 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 74/78 (94%), Gaps = 2/78 (2%)

Query: 17 ITDDQILDLVTKLQQLLPEIGNRRSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLA 76
          I+DDQI+DLV+KLQQL+PEI NRRSDKVSA+KVLQETCNYI++LHREVDDLS+RLSELLA
Sbjct: 16 ISDDQIIDLVSKLQQLIPEIRNRRSDKVSASKVLQETCNYIKSLHREVDDLSDRLSELLA 75

Query: 77 TT--DTAQAAIIRNLLMQ 92
          +T  D+AQAAIIR+L M+
Sbjct: 76 STDSDSAQAAIIRSLFME 93


>29822.m003497 transcription regulator, putative
          Length = 90

 Score =  122 bits (305), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 70/77 (90%), Gaps = 2/77 (2%)

Query: 17 ITDDQILDLVTKLQQLLPEIGNRRSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLA 76
          ITDDQI+DLV+KL+QLLPEI  RR DKVSA+KVLQETCNYIRNLHREVDDLSERLS+LLA
Sbjct: 14 ITDDQIIDLVSKLRQLLPEIRQRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLA 73

Query: 77 T--TDTAQAAIIRNLLM 91
          T   D+ +AAIIR+L+M
Sbjct: 74 TIDADSPEAAIIRSLIM 90


>30147.m014106 DNA binding protein, putative
          Length = 89

 Score = 74.7 bits (182), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 50/65 (76%)

Query: 17 ITDDQILDLVTKLQQLLPEIGNRRSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLA 76
           T D++ DLV KLQ LLP++  R++ +VS +K+LQETC+YIR+L  E DDLSE+LS+LL 
Sbjct: 12 FTQDELNDLVLKLQALLPQLNQRQASRVSVSKILQETCSYIRSLQSEADDLSEKLSQLLD 71

Query: 77 TTDTA 81
          + + A
Sbjct: 72 SFNIA 76