Jatropha Genome Database

JcCA0045831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045831.20 + phase: 1 /TE/partial
         (63 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30136.m001034 conserved hypothetical protein                           60   2e-10
29869.m001168 conserved hypothetical protein                           56   4e-09
29825.m000319 nuclease, putative                                       55   5e-09
30115.m001200 conserved hypothetical protein                           53   3e-08
29939.m000527 nucleic acid binding protein, putative                   51   1e-07
30005.m001269 nucleic acid binding protein, putative                   50   2e-07
30068.m002534 conserved hypothetical protein                           50   3e-07
30162.m001269 nuclease, putative                                       49   4e-07
29748.m000384 conserved hypothetical protein                           49   4e-07
29736.m002093 conserved hypothetical protein                           48   1e-06
30000.m000388 nuclease, putative                                       47   2e-06
29641.m000379 nuclease, putative                                       46   3e-06
29970.m001004 conserved hypothetical protein                           46   4e-06
30180.m001065 hypothetical protein                                     45   6e-06
29822.m003334 hypothetical protein                                     45   7e-06

>30136.m001034 conserved hypothetical protein
          Length = 153

 Score = 59.7 bits (143), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 2   SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
           S G + R++EG WL G    +G C+ F+A+ WGV  GL LAW  G++  +L IDP   + 
Sbjct: 58  SAGSLIRSAEGSWLSGFTHKLGSCSPFKAKLWGVLDGLRLAWDKGFKHVDLVIDPSEAIK 117

Query: 62  V 62
           V
Sbjct: 118 V 118


>29869.m001168 conserved hypothetical protein
          Length = 149

 Score = 55.8 bits (133), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 4   GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQV 58
           GGVFR+  GR ++G   NIGYC+A  AE W  + GL++AW  G R   L +D  +
Sbjct: 47  GGVFRDYRGRCVVGFMCNIGYCSAIGAELWAAFHGLTIAWNKGLRKLVLAMDSTL 101


>29825.m000319 nuclease, putative
          Length = 113

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 37/57 (64%)

Query: 4  GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLV 60
          GG+FRN  G W+ G  ++IGYC A EAE W   QGL +A   G++   L++D Q+LV
Sbjct: 14 GGLFRNEFGDWIGGYVVHIGYCTAIEAELWAALQGLLIARRRGYQRLVLEVDSQLLV 70


>30115.m001200 conserved hypothetical protein
          Length = 159

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 29/48 (60%)

Query: 2  SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRT 49
          S GG+ RN+EG WL G    +G C+   AEFWGV  GL LAW  G + 
Sbjct: 48 SAGGLIRNTEGSWLFGFTHKLGSCSPLGAEFWGVLDGLRLAWDKGTKA 95


>29939.m000527 nucleic acid binding protein, putative
          Length = 209

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 5   GVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVDVL 63
           GV  +  G WL G  M + +C     E WG+YQGL LAW  G R  ++++D + +V ++
Sbjct: 69  GVIHDDIGNWLRGFFMKMSFCIVTATELWGLYQGLELAWKIGIRRIQVEVDNKRVVKLI 127


>30005.m001269 nucleic acid binding protein, putative
          Length = 127

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 4  GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQV 58
          GG+ RNS+G WL G    IG C+A EAE WG     +LAW  G++   L++D  +
Sbjct: 36 GGLCRNSQGHWLTGFAFKIGTCSALEAELWGA----NLAWAKGFKKVILEVDSSM 86


>30068.m002534 conserved hypothetical protein
          Length = 186

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%)

Query: 4   GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQID 55
           GG+ R++ GRW+ G  +NI  C+   AE WGVYQGL LA   G     +++D
Sbjct: 63  GGLIRDTNGRWVAGFSINISLCSITCAELWGVYQGLMLANRLGIVNLMVEVD 114


>30162.m001269 nuclease, putative
          Length = 145

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 4  GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
          GG+ R+S G W+ G  ++IG C+   AE W   QG+SLAW  G     +++D  ++ D
Sbjct: 22 GGIIRDSNGCWVGGFVIHIGACDPVGAELWAFLQGISLAWSKGIHNLIVEVDSSLVAD 79


>29748.m000384 conserved hypothetical protein
          Length = 147

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%)

Query: 5   GVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVDVL 63
           GV R S+G+ ++G  +N+G C+    E W V  GL ++     R  EL++D +V++D++
Sbjct: 49  GVLRTSDGKLVVGFMVNLGNCSVLMVELWSVLYGLRMSLQQDIRRIELEVDNKVVIDMI 107


>29736.m002093 conserved hypothetical protein
          Length = 279

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 2   SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
           S GGV R+    WL G G NIG C+  +A+ W    GL +A   G+R   L++D  + ++
Sbjct: 183 SAGGVIRDCRAGWLSGFGYNIGKCSPLDAKLWEALAGLDMASRQGYRKIILEMDSSLALE 242

Query: 62  VL 63
            +
Sbjct: 243 YI 244


>30000.m000388 nuclease, putative
          Length = 219

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 2   SCGGVFRNSEGRWLLGVGMNIGYC-NAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLV 60
           +  G+FRN  G+W  G  + +  C +AF AE +G+  GL++AW  G+R   L+ D +  V
Sbjct: 70  TAAGLFRNCNGQWCGGFAIKLRDCYSAFVAELFGILNGLNIAWNAGFRNIILETDNKTSV 129

Query: 61  D 61
           D
Sbjct: 130 D 130


>29641.m000379 nuclease, putative
          Length = 177

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 2  SCGGVFRNSEGRWLLGVGMNIGYC-NAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLV 60
          +  G+FRNS+G+W     + +  C +AF AE   +  GL +AW  G++   L+ D ++ V
Sbjct: 28 TAAGLFRNSDGQWCGAFAIKLTDCYSAFVAELCSILNGLKIAWDAGFKNIILETDNKISV 87

Query: 61 DVL 63
          D +
Sbjct: 88 DTI 90


>29970.m001004 conserved hypothetical protein
          Length = 132

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 4   GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVDVL 63
           GG+ +++  +W+  + MNIG C+   AE WG YQGL LA   G     +++D   +V +L
Sbjct: 56  GGLIKDTNDKWVACLSMNIGLCSITFAELWGGYQGLMLADSLGITNLMVEVDSMTVVCLL 115


>30180.m001065 hypothetical protein
          Length = 136

 Score = 45.4 bits (106), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 2   SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGW 47
           +   +  + +G W++G    IG C  FEA+ WG++ GL LAW  G+
Sbjct: 91  TASALLHDDKGNWIVGFSQKIGSCLVFEAKMWGLFTGLQLAWSLGF 136


>29822.m003334 hypothetical protein
          Length = 111

 Score = 45.1 bits (105), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 4  GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVDVL 63
          GG+ R   G W  G   N+  C+ F AE WGV  GL LAW  G+R   L  D   L+++L
Sbjct: 14 GGLIRTCSGVWYSGFAANLSICSVFTAECWGVLYGLCLAWQRGFRCVILVWD-MCLINML 72