Jatropha Genome Database

JcCA0045831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045831.10 - phase: 0 
         (53 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014100 Vacuolar protein sorting, putative                       88   9e-19
29736.m002018 Vacuolar protein sorting, putative                       84   2e-17

>30147.m014100 Vacuolar protein sorting, putative
          Length = 191

 Score = 87.8 bits (216), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 45/51 (88%), Positives = 46/51 (90%), Gaps = 1/51 (1%)

Query: 1  MVLVLALGDLHIPHRAPDLPAKFKSMLVPGKIQHIICTGNLCIK-VCLYLR 50
          MVLVLALGDLHIPHRA DLPAKFKSMLVPGKIQHIICTGNL IK V  YL+
Sbjct: 1  MVLVLALGDLHIPHRASDLPAKFKSMLVPGKIQHIICTGNLSIKEVHDYLK 51


>29736.m002018 Vacuolar protein sorting, putative
          Length = 188

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/44 (90%), Positives = 41/44 (93%)

Query: 1  MVLVLALGDLHIPHRAPDLPAKFKSMLVPGKIQHIICTGNLCIK 44
          MVLVLA+GDLHIPHRA DLP KFKSMLVPGKIQHIICTGN CIK
Sbjct: 1  MVLVLAIGDLHIPHRAADLPPKFKSMLVPGKIQHIICTGNPCIK 44