Jatropha Genome Database

JcCA0045271.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045271.30 - phase: 0 /partial
         (122 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004545 ATP binding protein, putative                           180   2e-46
30076.m004468 dicer-1, putative                                        84   2e-17
29737.m001250 Ribonuclease III, putative                               72   8e-14
29762.m000489 ribonuclease III, putative                               65   7e-12
29739.m003642 Ribonuclease III, putative                               60   2e-10

>29929.m004545 ATP binding protein, putative
          Length = 1388

 Score =  180 bits (456), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/113 (76%), Positives = 98/113 (86%)

Query: 1    VLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQKNNFEK 60
            VLGDVIESLAGAI+VDSGYNKE VF SIRPLLEPLITPETIRLHP REL ELCQK +F++
Sbjct: 1273 VLGDVIESLAGAIFVDSGYNKEVVFNSIRPLLEPLITPETIRLHPTRELTELCQKQHFDR 1332

Query: 61   SKSVVQRKNGMYSVTEEVVAHGEIFKHTSEAADKKTAKRVASKEVLRALKDTI 113
             K VV R NGM  VT EV A+G +FKHTS AA++KTAKR+ASKEVLRALKD++
Sbjct: 1333 RKPVVSRNNGMSCVTVEVEANGVVFKHTSAAAERKTAKRLASKEVLRALKDSL 1385


>30076.m004468 dicer-1, putative
          Length = 1543

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 70/111 (63%), Gaps = 4/111 (3%)

Query: 1    VLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQKNNFEK 60
            VLGD++ES+AGAI++DSG +   V++  +PLL P++TPET+ +HPVREL E CQ+   E 
Sbjct: 1335 VLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQA-EG 1393

Query: 61   SKSVVQRKNGMYSVTEEVVAHGEIFKHTSEAADKKTAKRVASKEVLRALKD 111
             +    R   + +V  EV   G +    ++   KK A+++A++  L  LKD
Sbjct: 1394 LEYKATRSGNLATV--EVFIDG-VQVGVAQNPQKKMAQKLAARNALVILKD 1441


>29737.m001250 Ribonuclease III, putative
          Length = 1633

 Score = 71.6 bits (174), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 1    VLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQKNNFEK 60
            VLGD++ES  GAI++D+G++   +++ +   L+P++    + L+P REL+E C+ + ++ 
Sbjct: 1334 VLGDLVESCIGAIFLDTGFDLNCIWKLMLSFLDPILNSSNVLLNPFRELHEFCESHKWKL 1393

Query: 61   SKSVVQRKNGMYSVTEEVVAHGEIFKHTSEAADKKTAKRVASKEVLRALKDTIY 114
                ++R    + V  +V         ++  ++KK A R+AS++++  LKD  Y
Sbjct: 1394 QFPTLKRDMN-FLVEAKVTGKDICLDASANNSNKKEAIRIASEQIIVKLKDQGY 1446


>29762.m000489 ribonuclease III, putative
          Length = 342

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 6/111 (5%)

Query: 1   VLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRL--HPVRELNELCQKNNF 58
           VL D++ES+A A+YVD  ++ + ++   R LLEP++TPE ++    P+  L ELCQK   
Sbjct: 133 VLADIVESVAAAVYVDVNFDLQRLWVIFRGLLEPIVTPEDLQQQPQPMTMLFELCQKKG- 191

Query: 59  EKSKSVVQRKNGMYSVTEEVVAHGEIFKHTSEAADKKTAKRVASKEVLRAL 109
            K   +V  K+G  ++    V  G +   +SE   K+TAK  A+K  L+ L
Sbjct: 192 -KEVDIVHWKSGTKNIASIYVDGGFVASGSSE--QKETAKLNAAKGALQKL 239


>29739.m003642 Ribonuclease III, putative
          Length = 1660

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 38/52 (73%)

Query: 2    LGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELC 53
            LGD++ES+AGA+ +D+  N + V+R   PLL PL TP+ + L P+REL +LC
Sbjct: 1390 LGDLLESIAGAMLIDAKLNLDEVWRIFMPLLSPLATPQNLELPPLRELMQLC 1441