Jatropha Genome Database

JcCA0045271.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045271.20 - phase: 0 
         (379 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004546 peptide chain release factor, putative                  674   0.0  
30128.m008903 peptide chain release factor, putative                  260   7e-70
29647.m002007 peptide chain release factor, putative                  154   6e-38
30076.m004567 peptide chain release factor, putative                  141   5e-34
30063.m001442 peptide chain release factor, putative                   49   3e-06

>29929.m004546 peptide chain release factor, putative
          Length = 458

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/376 (86%), Positives = 343/376 (91%)

Query: 1   MQDFYSLRRDVEAASERVEEIIASXXXXXXXXXXXXXXXXXXDSSLWDDRARAQEILSAL 60
           MQDFYSLRRDVEAASERVEEI  S                  ++S WDDRA AQE L AL
Sbjct: 83  MQDFYSLRRDVEAASERVEEIRTSAGLQQLEQEVTNLESKAANTSFWDDRATAQETLLAL 142

Query: 61  TDVKDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLEEATAIVKELNKSLDRFELTQL 120
           TDVKDKIKLLTEFKT VEDAETIVKLTEEMDS D GLLEEA++I+KELNKSL+RFELTQL
Sbjct: 143 TDVKDKIKLLTEFKTKVEDAETIVKLTEEMDSIDTGLLEEASSIIKELNKSLERFELTQL 202

Query: 121 LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEKSPGEEAGIKS 180
           LSGPYDKE AVISITAGAGGTDAQDWADMLLRMY+RWGEKQRYKTRVVEKSPGEEAGIKS
Sbjct: 203 LSGPYDKESAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSPGEEAGIKS 262

Query: 181 VTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEE 240
             IE+EGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSG+EVMPLLPEESMDVE+PEE
Sbjct: 263 AMIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGIEVMPLLPEESMDVELPEE 322

Query: 241 DLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV 300
           DLEI+FSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV
Sbjct: 323 DLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV 382

Query: 301 IAVEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDINSVMDGELEPF 360
           IAVEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG+ETSD+ SVMDGELE F
Sbjct: 383 IAVEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGYETSDVTSVMDGELEAF 442

Query: 361 IKAYLKYKYSMAMSAS 376
           IKAYLKYKYSM +S++
Sbjct: 443 IKAYLKYKYSMTLSST 458


>30128.m008903 peptide chain release factor, putative
          Length = 550

 Score =  260 bits (665), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 135/320 (42%), Positives = 196/320 (61%), Gaps = 2/320 (0%)

Query: 46  LWDDRARAQEILSALTDVKDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLEEATAIV 105
           LWDD   A +I      +  K K +T F+  + +   ++KL  E D  DA L  E+   +
Sbjct: 174 LWDDPVLAGKISREHGSLMAKRKEVTAFERELLEHIDMIKLAREED--DAELESESLKAL 231

Query: 106 KELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKT 165
             + ++    EL  LL+G  D     I + +GAGGT++ DWA M+++MY  W +++ Y  
Sbjct: 232 FHMRRNSKEKELEALLAGEQDSCSCYIEVQSGAGGTESMDWAKMVMQMYKLWAQRRGYNV 291

Query: 166 RVVEKSPGEEAGIKSVTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVM 225
            VV++ PGE AGIK  TI+++G YA+GY   E G HR+VR SPF++   R TSF+ V V+
Sbjct: 292 TVVDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVI 351

Query: 226 PLLPEESMDVEIPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLA 285
           P+L + S  V+I E DL I   R+GG GGQ+ N  E+AVRI HIPTGVT  C  ERSQ  
Sbjct: 352 PILGDGSTHVQINESDLRIERYRSGGPGGQHANTTESAVRIVHIPTGVTATCQNERSQHM 411

Query: 286 NKIKALSRLKAKLLVIAVEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFE 345
           NK  A++ L+++L  + + ++A    Q      +  WG QIR YV HPY++VKD+RT +E
Sbjct: 412 NKASAMAVLQSRLDQLEMARQAQMNAQHTQSLTEISWGNQIRTYVLHPYRMVKDLRTNYE 471

Query: 346 TSDINSVMDGELEPFIKAYL 365
            SD +SV++GE++ FI +YL
Sbjct: 472 VSDPDSVLEGEIDGFILSYL 491


>29647.m002007 peptide chain release factor, putative
          Length = 370

 Score =  154 bits (389), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 91/247 (36%), Positives = 140/247 (56%), Gaps = 13/247 (5%)

Query: 122 SGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEKSPGEEAGIKSV 181
           S P D    ++ + AG GG +A  WA  L+RMY ++ E+  +K  +V  S  E+ G K+ 
Sbjct: 110 SDPLDARNIMLEVRAGTGGDEAGLWAGDLVRMYEKYCEQNSWKYAIVSCSEAEKGGYKTY 169

Query: 182 TIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEED 241
            +E++G   Y  L  E G HR+ R      +G   TS + V +MP   E  ++V I  +D
Sbjct: 170 VMEVKGNRVYSKLKYESGVHRVQRVPQTETQGRVHTSTATVAIMPEADE--VEVVIDPKD 227

Query: 242 LEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVI 301
           +E+T +R+GG GGQNVNKVETAV + H PTG+ + CTEER+QL NK +AL  L+AKL  +
Sbjct: 228 IELTTARSGGAGGQNVNKVETAVDLFHKPTGIRIFCTEERTQLQNKTRALQLLRAKLYEM 287

Query: 302 AVEQRASEIKQIR----GDAVKAEWGQQIRNYVFHPYKLVKD-VRTGFETSDINSVMDGE 356
            V ++   I+  R    G   +AE   +IR Y +   ++    ++  FE   + S + G+
Sbjct: 288 KVREQQESIRNQRKLQVGTGARAE---KIRTYNYKDNRVTDHRLKMNFE---LTSFLQGD 341

Query: 357 LEPFIKA 363
           +E  ++A
Sbjct: 342 IENAVQA 348


>30076.m004567 peptide chain release factor, putative
          Length = 422

 Score =  141 bits (356), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 157/317 (49%), Gaps = 17/317 (5%)

Query: 52  RAQEILSALTDVKDKIKLLTEFKTMV-EDAETIVKLTEEMDSTDAGLLEEATAIVKELNK 110
           R  E++S L  ++ +I  L        ED   I    EE++      +EE   +   L K
Sbjct: 105 RPVELISELRSIQKEIDGLRSLMAECPEDKHMIDMANEELNQA----IEEEKRLQNVLLK 160

Query: 111 SLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEK 170
           SL       L +   D+   ++ + AG GG +A  ++  + RMY R+ +K+ +K  VV+ 
Sbjct: 161 SL-------LPTDDADERDCILEVRAGTGGEEASLFSMDIFRMYERYSQKKGWKFEVVDI 213

Query: 171 SPGEEAGIKSVTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPE 230
           +  +  G K  +  I G   +G L  E G HR+ R       G   TS   V ++P   E
Sbjct: 214 TESDLKGYKEASAAISGAGVFGKLKFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADE 273

Query: 231 ESMDVEIPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKA 290
             +DV++  EDL I   R+GG GGQ+ N   +AVR+TH+PTG+TV   +ERSQ  NK KA
Sbjct: 274 --VDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHLPTGMTVSIQDERSQHMNKAKA 331

Query: 291 LSRLKAKLLVIAVEQRASEIKQIRGDAV-KAEWGQQIRNYVFHPYKLVKDVRTGFETSDI 349
           L  L AKL  I   +      ++R + +   +  ++IR Y F P   V D R G     I
Sbjct: 332 LKVLCAKLYEIERSRIQMSRSKLRSEQIGSGDRSERIRTYNF-PQGRVTDHRVGITHHAI 390

Query: 350 NSVMDGE-LEPFIKAYL 365
           N++M GE L+ FI A L
Sbjct: 391 NNMMQGESLDVFIDALL 407


>30063.m001442 peptide chain release factor, putative
          Length = 185

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 242 LEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANK 287
            E+   +A G GGQ+ NK E+AVRI H+PTG+  +  E+RSQ  N+
Sbjct: 4   CEMDTYKASGPGGQHRNKRESAVRIKHLPTGIISQAVEDRSQHKNR 49